Gene Information

Name : RHA1_ro07271 (RHA1_ro07271)
Accession : YP_707193.1
Strain : Rhodococcus jostii RHA1
Genome accession: NC_008268
Putative virulence/resistance : Virulence
Product : metal ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 7780709 - 7781620 bp
Length : 912 bp
Strand : -
Note : tc: 3.A.1.15

DNA sequence : 
GTGCGACGACGGCCGGCCGCGGTGCTGACAGCGCTTGCCACGGCGCTGATGTTGTCGGGGTGCGGCACGGGTGACGGGCC
GGAAAACGACAAACCGGTGGTGTTGACCACGTTCACCGTTCTCGCCGATATCGCCGCCAACGTCGGAGGCGAGCACGTGA
CCGTCGAGTCGATCACCAAGGCCGGCGCGGAAATCCACGGATACGAGCCCACCCCGGGCGATATCAAGAAGGCAGCCGAG
GCCGACCTGATCCTCGACAACGGGATGAACCTGGAGGCGTGGTTCGCCCAGTTCGTCGACGGCTTGGACGTCGAGCACGT
GGTCGTGAGCGACGGCGTCGAGCCGATCGCCATCGGCGAGGATGCCTACGCGGGCAAACCGAATCCGCACGCCTGGATGT
CACCGCTGAACGTGCAGATCTACGTCGACAACATGGTCGCCGTGTTCAGCGAACTCGATTCGGCCCATGCGGCCGACTAT
CGCATCAACGGCGACGCGTACAAGGCGCAGTTGCAGAAGGTGCAGGACGAGTTGGTCGCCGAGCTGGGAGCGCTGCCGGT
CAACGAACGGGCGCTGGTCACGTGCGAGGGAGCGTTCTCGTATCTGGCCCGGGATGCCGGGCTGACCGAGAAGTACATCT
GGCCGGTCAATGCCGAACAGCAGGCCACGCCCCAGCAGATCGCGTCGACGATCGAGTTCGTCAAGGACAACCGGGTTCCG
GCGGTGTTCTGCGAATCCACGGTGTCGGATGCGCCGATGCAACGCGTCGTCGAAGCCACGGGCGCCGCGTTCGGCGGCAC
CCTCTACGTCGACTCCCTGTCCGAGGCGGACGGGCCCGTGCCGACGTACCTCGATCTGATCCGGCACGACGCCGACACCC
TCACCTCCGCACTGAACGGGCAGCAATCATGA

Protein sequence : 
MRRRPAAVLTALATALMLSGCGTGDGPENDKPVVLTTFTVLADIAANVGGEHVTVESITKAGAEIHGYEPTPGDIKKAAE
ADLILDNGMNLEAWFAQFVDGLDVEHVVVSDGVEPIAIGEDAYAGKPNPHAWMSPLNVQIYVDNMVAVFSELDSAHAADY
RINGDAYKAQLQKVQDELVAELGALPVNERALVTCEGAFSYLARDAGLTEKYIWPVNAEQQATPQQIASTIEFVKDNRVP
AVFCESTVSDAPMQRVVEATGAAFGGTLYVDSLSEADGPVPTYLDLIRHDADTLTSALNGQQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-71 55
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-71 55
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-71 55
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-71 55
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 9e-72 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHA1_ro07271 YP_707193.1 metal ABC transporter substrate-binding protein BAC0349 Protein 5e-72 55
RHA1_ro07271 YP_707193.1 metal ABC transporter substrate-binding protein BAC0439 Protein 4e-66 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHA1_ro07271 YP_707193.1 metal ABC transporter substrate-binding protein VFG0525 Protein 5e-72 55