Gene Information

Name : RHA1_ro06081 (RHA1_ro06081)
Accession : YP_706016.1
Strain : Rhodococcus jostii RHA1
Genome accession: NC_008268
Putative virulence/resistance : Virulence
Product : dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : 1.2.1.-
Position : 6543493 - 6545016 bp
Length : 1524 bp
Strand : +
Note : -

DNA sequence :
ATGACCGTGTATGCCCGCCCGGGTTCGCCGGACGCCGTCATGTCCTTCCAATCGCGTTACGACAACTGGATCGGCGGCCA
GTGGGTTGCGCCCGTCAAGGGCCAGTACTTCGAGAATCCGACACCCGTCACCGGACAGCCGTTTTGCGAGGTCGCGCGTT
CGACGTCCGAGGACATCGAACTTGCGCTCGACGCCGCACACGCTGCGGCTCCGGCCTGGGGCAAGACGTCGGTGGCGGAG
CGCGCCATCATCCTGAACAAGATCGCGGACCGCATCGAGGAGAACCTCGAGTCCATCGCGCTCGCCGAGTCCTGGGACAA
CGGCAAGCCGATCCGCGAGACCCTGAACGCCGACATTCCGCTGGCCGTCGACCACTTCCGCTACTTCGCCGGCGCGATCC
GGGCGCAGGAAGGCGCACTGTCGGAGATCGACTCCGACACCGTCGCCTACCACTTCCACGAGCCGCTCGGCGTCGTCGGC
CAGATCATCCCCTGGAACTTCCCGATCCTCATGGCCGTGTGGAAGCTCGCTCCCGCACTCGCCGCGGGCAACGCGGTCGT
CCTCAAGCCCGCCGAGCAGACCCCGGCGTCGATCCTGCACCTGATCTCCGTCATCGGCGACCTGCTGCCCGCCGGTGTGG
TGAACATCGTCAACGGATTCGGTGTGGAGGCGGGCAAGCCGCTCGCCTCGAGCCCACGGATCCGGAAGATCGCGTTCACC
GGTGAGACCACCACGGGCCGGCTCATCATGCAGTACGCGTCGCAGAACCTGATCCCGGTCACCCTCGAACTCGGTGGCAA
GAGCCCCAACATCTTCTTCTCCGACGTGCTGTCCTCCAACGACGACTACCAGGACAAGGCGCTCGAGGGCTTCACGATGT
TCGCCCTCAACCAGGGCGAGGTGTGCACCTGCCCGTCGCGTTCGCTGATCCAGGAGGACATCTTCGACGAGTTCCTCGCG
ATGGCGGCCATCCGCACCAAGGCCGTCCGCCAGGGCGACCCGCTCGACACCGACACGATGATCGGCGCGCAGGCCTCGAA
CGATCAGCTCGAGAAGATCCTGTCGTACATCGAGATCGGCAAGGGCGAAGGCGCCAAGGTCGTCACCGGCGGTGAGCGCG
CCGAACTCGGCGGCGACCTGTCCGGCGGCTACTACGTGCAGCCGACGATCTTCACCGGTCAGAACAAGATGCGGATCTTC
CAGGAGGAGATCTTCGGTCCCGTCGTCTCCGTCACGTCGTTCAAGGACTACGACCAGGCCATCGAGATCGCCAACGACAC
GCTGTACGGCCTCGGCGCCGGCGTGTGGTCGCGGGACGGTGGCGTCGCCTACCGCGCCGGTCGCGACATCCAGGCCGGGC
GCGTGTGGACCAACACGTACCACCAGTACCCCGCGCACGCGGCGTTCGGTGGCTACAAGCAGTCCGGCATCGGCCGCGAG
AACCACCTGATGATGCTCGAGCACTACCAGCAGACGAAGAACCTGCTGGTCAGCTACGCCCAGAAGGCTCAGGGCTTCTT
CTGA

Protein sequence :
MTVYARPGSPDAVMSFQSRYDNWIGGQWVAPVKGQYFENPTPVTGQPFCEVARSTSEDIELALDAAHAAAPAWGKTSVAE
RAIILNKIADRIEENLESIALAESWDNGKPIRETLNADIPLAVDHFRYFAGAIRAQEGALSEIDSDTVAYHFHEPLGVVG
QIIPWNFPILMAVWKLAPALAAGNAVVLKPAEQTPASILHLISVIGDLLPAGVVNIVNGFGVEAGKPLASSPRIRKIAFT
GETTTGRLIMQYASQNLIPVTLELGGKSPNIFFSDVLSSNDDYQDKALEGFTMFALNQGEVCTCPSRSLIQEDIFDEFLA
MAAIRTKAVRQGDPLDTDTMIGAQASNDQLEKILSYIEIGKGEGAKVVTGGERAELGGDLSGGYYVQPTIFTGQNKMRIF
QEEIFGPVVSVTSFKDYDQAIEIANDTLYGLGAGVWSRDGGVAYRAGRDIQAGRVWTNTYHQYPAHAAFGGYKQSGIGRE
NHLMMLEHYQQTKNLLVSYAQKAQGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-148 63
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 7e-155 62
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 7e-155 62
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 7e-155 62
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-154 62
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 4e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RHA1_ro06081 YP_706016.1 dehydrogenase VFG0082 Protein 2e-148 63