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Name : clpC1 (RHA1_ro04423) Accession : YP_704367.1 Strain : Rhodococcus jostii RHA1 Genome accession: NC_008268 Putative virulence/resistance : Virulence Product : ATP-binding subunit of ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4661352 - 4663889 bp Length : 2538 bp Strand : + Note : - DNA sequence : ATGTTCGAGAGGTTCACCGATCGCGCACGGCGCGTTGTTGTCCTGGCTCAAGAAGAAGCCAGGATGCTCAACCACAACTA CATCGGTACGGAGCACATCCTGCTCGGCCTCATTCACGAGGGCGAAGGTGTCGCTGCCAAGTCGCTGGAGTCGTTGGGCA TCTCCCTCGAAGGAGTGCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGCCACATCCCCTTC ACCCCGCGTGCCAAAAAAGTCCTGGAGCTCAGCCTGCGCGAGGCACTGCAGCTCGGACACAACTACATCGGCACGGAGCA CATCCTGCTGGGCCTCATCCGCGAGGGTGAAGGCGTCGCGGCGCAGGTGCTGGTCAAGCTCGGTGCCGACCTCAACCGGG TGCGTCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCAAGGAGCCGGCCGAGGCCGGCGGCACTCGCGGCGAGGCG GGCACCCCGTCCACGTCGCTGGTGCTCGACCAGTTCGGTCGCAACCTCACCCAGGCCGCCCTCGAAGGCAAGCTCGACCC CGTCATCGGCCGCTCGAAGGAAATCGAGCGCGTCATGCAGGTGCTGTCGCGCCGTACCAAGAACAACCCGGTCCTGATCG GCGAGCCCGGTGTCGGTAAGACCGCCGTCGTCGAGGGTCTCGCTCAGGCCATCGTCAACGGCGAGGTCCCCGAGACGCTC AAGGACAAGCAGCTGTACACGCTCGACCTCGGGTCGCTCGTGGCAGGCAGCCGCTACCGCGGTGACTTCGAAGAGCGCCT GAAGAAGGTCCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACCCTCGTGGGTGCAG GCGCGGCCGAGGGCGCCATCGACGCGGCCTCGATCCTCAAGCCGAAGCTCGCCCGCGGTGAGCTGCAGACCATCGGTGCC ACCACCCTCGACGAGTACCGCAAGTACATCGAGAAGGACGCCGCACTGGAGCGCCGCTTCCAGCCGGTGCAGGTCGGCGA GCCGACGGTGGAACACACCATCGAGATCCTCAAGGGTCTTCGCGACCGTTACGAGGCGCACCACCGCGTGTCCATCACGG ACGGTGCACTCGTCGCCGCGGCCACCCTGGCCGATCGCTACATCAACGACCGCTTCCTGCCGGACAAGGCCATCGACCTC ATCGACGAGGCCGGAGCCCGGATGCGCATCCGCCGGATGACCGCACCGCCGGACCTCCGCGAGTTCGACGACAAGATCGC CGACGCCCGCCGCGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGAACCTGCGCGACAAGGAGAAGA CCCTCGTCGCCCAGCGTGCGGAGCGGGAGAAGCAGTGGCGTTCCGGCGACCTGGACGTCATCGCCGAGGTCGACGACGAG CAGATCGCCGAGGTCCTGGGTAACTGGACCGGCATCCCCGTGTTCAAGCTCACCGAGGAGGAGACCACGCGTCTGCTCCG CATGGAGGAGGAGCTGCACAAGCGGATCATCGGTCAGGAAGACGCGGTCAAGGCTGTCGCCAAAGCCATCCGTCGTACCC GTGCCGGCCTGAAGGACCCGAAGCGTCCGTCCGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTG GCCAAGTCGCTCGCCAACTTCCTGTTCGGTGAGGACGACGCTCTCATCCAGATCGACATGGGTGAGTTCCACGACCGCTT CACCGCGTCGCGGCTGTTCGGTGCCCCTCCCGGCTACGTCGGCTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCC GCAAGCCGTTCAGCGTGGTGCTGTTCGACGAGATCGAGAAGGCACACCAGGAGATCTACAACACGCTCCTGCAGGTGCTC GAGGACGGCCGTCTCACCGACGGTCAGGGCCGGACCGTGGACTTCAAGAACACGGTGCTCATCTTCACCTCGAACCTCGG TACCTCGGACATCTCCAAGGCTGTGGGTCTCGGCTTCACGTCCGGTAAGGGCGACGAGTCGAACTACGAGCGGATGAAGC TCAAGGTGCACGACGAGCTGAAGAAGCACTTCCGTCCCGAGTTCCTCAACCGCATCGACGACATCGTCGTGTTCCACCAG CTCACCACCGAGCAGATCGTTCAGATGGTGGACCTGATGGTGGCGCGTGTCGAGGTGGCCTTGAAGAACAAGGACATGAC GATGGAGGTCACCGACAAGGCCAAGTCGCTGCTGGCCAAGCGTGGCTTCGATCCGGTCCTGGGTGCGCGGCCGCTGCGTC GCACCATCCAGCGCGAGATCGAGGACCAGCTGTCGGAGAAGATCCTCTTCGGCGAGGTCGGCCCCGGTCAGATCGTGTAC GTCGACGTCGAGAACTGGGACGGCGAAGGCGCGGGCGAGGACGCGAAGTTCACGTTCCGCGGCGAGACGAAGCCGGTCAC GGTTCCCGACGAGGTTCCGGTCGACCTGGCCAAGTCCGGCGCAGCCGACTCGGAGTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAEAGGTRGEA GTPSTSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEVPETL KDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGA TTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDL IDEAGARMRIRRMTAPPDLREFDDKIADARREKESAIDAQDFEKAANLRDKEKTLVAQRAEREKQWRSGDLDVIAEVDDE QIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQEDAVKAVAKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTEL AKSLANFLFGEDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVL EDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKAVGLGFTSGKGDESNYERMKLKVHDELKKHFRPEFLNRIDDIVVFHQ LTTEQIVQMVDLMVARVEVALKNKDMTMEVTDKAKSLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFGEVGPGQIVY VDVENWDGEGAGEDAKFTFRGETKPVTVPDEVPVDLAKSGAADSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 82 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC1 | YP_704367.1 | ATP-binding subunit of ATP-dependent Clp protease | VFG0079 | Protein | 0.0 | 60 |
| clpC1 | YP_704367.1 | ATP-binding subunit of ATP-dependent Clp protease | VFG0080 | Protein | 6e-144 | 51 |
