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Name : lysS (RHA1_ro03733) Accession : YP_703691.1 Strain : Rhodococcus jostii RHA1 Genome accession: NC_008268 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3938273 - 3941617 bp Length : 3345 bp Strand : - Note : catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTCAGCTAGCACCGAGACACACCACGCGTCCGAGGCGGCCGTCCCCACCGCACCACGGCCCCGACCCGGCCTCGGCAC GAAGAACGGGCGCCTGCACCAGGTTCCCCACATCGCGGGACTGATCCTGGGCGTCTTCTCGGTGCTCGTGTTCCTGTGGA GCATTTCGCCGGTGCTGCGCTACTACGTGCACGTGCCGCGGGAGTACGTCGACACCTACTACTTCGACGCCCCCGACACC AGCCTGTCGTGGGCTCTGGTGGTCGCGCTGCTCGCGGCGGCGCTGGCGAGTCGCAAGCGGATCGCCTGGTGGCTGCTCAC GATCTACCTGGTTCTGTTCCTGATCACCAACGTGATCGTGAGCATCACGGACAAGAACGTGAATGCGATGGCCGCCGCCG TGGTCCAGGTGGTGCTGATCGGCATCCTCATCGCGGCCCGCCCGGAGTTCTACACCCGAGTCCGGCGCGGCGCCGGCTGG AAAGCCCTCGGCGTACTCATCGTCGGGCTCGCCATCGGCACGCTCCTCGGCTGGGGCCTCGTCGAACTGTTCCCCGGCAC CCTGCCGCAGAATGAACGTTTCCTGTGGGCGCTGAATCGCGTGACCGCGCTCGCCGCCGCCGACAACGAACAATTCACCG GGCGCCCACACGGATTCGTCAACACCCTCCTCGGCCTGTTCGGTGCGATCGCACTTCTCGCCGCCGTCATCACTCTGTTC CGTGCCCAACGCTCCCACAACGCGCTCACCGGCAACGACGAATCGGCGTTGCGCGGGCTCCTGCTGCAGTACGGCGCGGA CGACTCCCTCGGCTACTTCGCCACCCGCCGCGACAAGGCCGTCGTGTTCGCACCCAGCGGGAAGGCGGCCATCACCTACC GCGTCGAGCTCGGCGTGTGCCTGGCGAGCGGCGACCCGATCGGCGACCCGGAGGCGTGGCCCCACGCGATCGAGGAGTGG CAGGCACTCGCGTCCCAATACGGCTGGGCCACCGCCGTGATGGGCGCCAGCGAAACCGGCGCCACCGCGTACAACAAGGC CGGTCTCACCGTGCTCCAGCTGGGCGACGAAGCCATCCTCCGCACCCGCGAATTCAACCTCAGCGGGCGCGACATGCGGC AGGTCCGCCAGGCCGTCACCCGTGTCCGGCGTCAGGGCGTCACCGTCCGGATCCGCAGACACCGGGACGTCCCGGCGGAG GAGATGGCCGAGACCATCCGGCTCGCGGACGCGTGGCGCGACACCGAGACCGAGCGCGGTTTCTCCATGGCCCTCGGCCG GCTCGGTGACCGCCTCGACGGCGACTGCCTGCTGGTGGAGGCGGTCGCCGAGGACGGCGAGATCGACGGCATCCTGTCGT TGGTGCCGTGGGGGCCGACCGGTGTCTCCCTCGACCTGATGCGACGCAAGCCGACGTCCCCCAACGGGGTGGTGGAGCTG ATGGTGTCCGAACTGGCCACCACCTCGGATCAATTCGGCATCACCAAGGTGTCACTGAACTTCGCGGTGTTCCGCTCCGT CTTCGAGGAAGGCTCCCGCATCGGGGCCGGACCCATCCTGCGGATCTGGCGTTCGATCCTCGTCTTCTTCTCCCGCTGGT GGCAGCTCGAGGCGCTGTACCGGTCGAACGTGAAGTACCAGCCGGAATGGGTGCCGCGGTTCCTCTGCTTCGAGGACAAC CGGGAACTGCTGCGCGTCGGATTCGCGTCGGCCGTCGCGGAAGGATTCGTGACCCTGCCCCGCTTCGGCCGCTCCGGAAC CCGGGACGCCCTCGAGCACACCGGCACCCACGCCGCGGTCCCCGCCGCACTCGTCGCCGCCGAAGGACTGCACTCCGACG GCAGCGCACCCGGCGAAGGCCTCGCACCGACGGCGACCGGCCCGAAGCGTCCCGAGCAGGTCCGCGTCCGGCTCGACAAA CTGGCCGGCCTCGCCGAACAGGGCATCGATCCCTATCCCGTCGCGTATCCGCCCAGCCACACGGTGACCGAGGCCGTGGA GTCGCCGGAGGGAACGACGGTCCGCATCGCGGGCCGCCTGCTCCGGATCCGCGACTACGGCGGCGTCGTGTTCGCGGTGG TCCGGGACTGGTCCGGCGACATCCAGATCCTCGTCGACGAGGCCCGGGTGGGTACCGACCGCATCCGGGCGTTCGCCGCC GAGTTCGACCTCGGTGACCTCGTCGAGGTCGCCGGCGTCATCGGATACAGCCGCCGCGGCGCGCTGTCGCTGCTCGCGAA CGAATGGCGCATGACCGGCAAGTGCCTGCACCCCCTGCCGGACAAGTGGAAGGGCCTGTCCGATCCGGAGACCCGCGTCC GGCAGCGGTACGTCGACCTGGCCATCAACTCCGATGCCCGCCGACTGCTCGAGGCCCGCAGCGCCGTCGTGAAGTCGCTG CGCGATTCGCTCGGCGGGCGCGGCTTCCTCGAGGTGGAGACACCGATCCTGCAGCAGGTGCACGGCGGCGCCAACGCGGC CCCGTTCCTCACCCACATCAACGCCTACAACCTGGACCTGTACCTGCGGATCGCGCCGGAGCTGTACCTCAAGCGGCTGT GCGTCGCCGGCATGGAGAAGGTGTTCGAGATCGGCCGCGTCTTCCGCAACGAGGGCGTCGATTTCAAACACAATCCCGAG TTCACGATCCTCGAGGCGTACGAGGCGCACAGCGACTACGAGAAGATGATGGTGCTGTGCCGGGAGCTCATCCAGACCGC GGCGATCGCGGCGTACGGACGCGAGATCATCATGCGGCCCGGCCCCGACGGCGCGCTGGTGGAGGTCGACATCTCCGGCG AATGGCCCGTCAAGACGATGCACCAGGCGGTCGCCGAGAAGCTCGGCGTCGACGTCTCACCGGAAACGCCGCTAACGGAA CTGCAACGGCTCTGCGACGAGCACGAGATCCCGTACCAGTCCACCTGGGACGCCGGCGCCGTCGCGCAGGAAATGTACGA GCACCTGGTGGAGGACTACACCGAGTTCCCCACCTTCTACACCAACTTCCCGACGTCGATGTCACCGCTCACCCGGCCGC ACCCCACGATTCCCGGGGTCGCCGCGAAGTGGGACCTCGTCGCGTGGGGCGTCGAACTCGGCACCGCGTACAGCGAACTC ACCGACCCGGTGGATCAGCGGAACCGGCTCACCGAGCAGTCGATGCTCGCGGCCGGCGGTGACGAGGAGGCGATGGAACT CGACGAGGACTTCCTGCAGGCCCTCGAGCACGCCATGCCCCCGACCGGCGGGCTCGGCATGGGCGTCGACCGGGTGGTCA TGCTCATCACCGGCGGCAGCATCCGTGAAACCCTCGCGTTCCCCCTGGCCAAGCCGAGGCAATGA Protein sequence : MSASTETHHASEAAVPTAPRPRPGLGTKNGRLHQVPHIAGLILGVFSVLVFLWSISPVLRYYVHVPREYVDTYYFDAPDT SLSWALVVALLAAALASRKRIAWWLLTIYLVLFLITNVIVSITDKNVNAMAAAVVQVVLIGILIAARPEFYTRVRRGAGW KALGVLIVGLAIGTLLGWGLVELFPGTLPQNERFLWALNRVTALAAADNEQFTGRPHGFVNTLLGLFGAIALLAAVITLF RAQRSHNALTGNDESALRGLLLQYGADDSLGYFATRRDKAVVFAPSGKAAITYRVELGVCLASGDPIGDPEAWPHAIEEW QALASQYGWATAVMGASETGATAYNKAGLTVLQLGDEAILRTREFNLSGRDMRQVRQAVTRVRRQGVTVRIRRHRDVPAE EMAETIRLADAWRDTETERGFSMALGRLGDRLDGDCLLVEAVAEDGEIDGILSLVPWGPTGVSLDLMRRKPTSPNGVVEL MVSELATTSDQFGITKVSLNFAVFRSVFEEGSRIGAGPILRIWRSILVFFSRWWQLEALYRSNVKYQPEWVPRFLCFEDN RELLRVGFASAVAEGFVTLPRFGRSGTRDALEHTGTHAAVPAALVAAEGLHSDGSAPGEGLAPTATGPKRPEQVRVRLDK LAGLAEQGIDPYPVAYPPSHTVTEAVESPEGTTVRIAGRLLRIRDYGGVVFAVVRDWSGDIQILVDEARVGTDRIRAFAA EFDLGDLVEVAGVIGYSRRGALSLLANEWRMTGKCLHPLPDKWKGLSDPETRVRQRYVDLAINSDARRLLEARSAVVKSL RDSLGGRGFLEVETPILQQVHGGANAAPFLTHINAYNLDLYLRIAPELYLKRLCVAGMEKVFEIGRVFRNEGVDFKHNPE FTILEAYEAHSDYEKMMVLCRELIQTAAIAAYGREIIMRPGPDGALVEVDISGEWPVKTMHQAVAEKLGVDVSPETPLTE LQRLCDEHEIPYQSTWDAGAVAQEMYEHLVEDYTEFPTFYTNFPTSMSPLTRPHPTIPGVAAKWDLVAWGVELGTAYSEL TDPVDQRNRLTEQSMLAAGGDEEAMELDEDFLQALEHAMPPTGGLGMGVDRVVMLITGGSIRETLAFPLAKPRQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-159 | 42 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-159 | 42 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 6e-159 | 42 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-159 | 42 |
