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Name : CPR_0789 (CPR_0789) Accession : YP_698114.1 Strain : Clostridium perfringens SM101 Genome accession: NC_008262 Putative virulence/resistance : Unknown Product : cymH protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : 3.2.1.135 Position : 914818 - 916650 bp Length : 1833 bp Strand : + Note : identified by match to protein family HMM PF00128; match to protein family HMM PF02903 DNA sequence : ATGAGTAAAATTACAAGAGAGGCAATACATCATATAGCTCAAAGCAATTATTCTTATGGATATGATAATGAAACTTTGCA TTTAAGGGTTAGGACTAAAAAAGGTGAAGTAAATAAAGTGGAAATAAGAATTGGAGATCCTTACATATGGGACGAAGGTG GTTGCGATGGAGGAAATATGAATGCCACTGGAGGACGATGGACAGGTGGAAAAAGTTATCCTATGAGAAAGGAATGTGAA ACAAAATACTTTGATCACTGGATAGTTTATTATAAACCATTAACCAAACGTTCAAGATATGGATTTATATTATATGGAGA TGAAGAAACTCTTTTATGCACAGAAAAAAGAATAGAGGAGTTAGATGGAAAGTATGATGAAGAAAAATTAAGTGCTATAG GAAACTTTTATTGTTTTCCATATTTAAATGCCATAGATGTTGCTAAAACACCACAATGGGTAAAAGATACTGTTTGGTAT CAAATATTCCCAGATAGATTTTGCAATGGAGATAAATCAATAGATCCAGAAAATGTTGAGCCATGGGGGACAGAGCCTAC TAGGGATAATTTTATGGGAGGAGATTTACAGGGAGTTTTAGATAAATTAGATTACTTATGCAATCTTGGAATTAATGGAC TATATTTTTGTCCTGTATTTGAAGCTACTGAGAATCATAGGTATGAAACCATAGATTATTTTAAAGTAGATCCAGCGCTT GGTGGAAATGAAGTCTTTAAAAAACTTGTAAGTGAAGCTCACAAAAGAGGAATGAAAATAATGTTAGATGCAGTATTTAA TCATATAGGTTATTTTTCACCAAAATGGCAAGATGTATTAAAGAATAATGAAAAATCAAGATATAAGGATTGGTTTTGTA TAAAGAAGTTTCCAGTACTTGAAAATGGCTTAGAAAATGTTGACGGAAATAATTTAAATTATGAAACCTTTGGAAGAATA GCCACAATGCCTAAACTAAACACAGAAAATCCAGATGTTGTAGAATATTTATTAAAAGTTGCTAAGTTCTGGGTTGAAGA AATGGATATAGATGGTTGGAGACTTGATGTATGTAATGAAGTAGACCATGTATTTTGGAGAAAATTTAGGGAAGTAGTAA AGGAAACTAATAAAGAAGTTTATATATTAGGAGAAGTTTGGCATGATGGACTTCCATGGCTTATGGGAGATCAGTTTGAT GCAGTTATGAATTACCCTGTTACAGATGCAGTAAAAGAATATTTCTGCTTAAATCAATCTAATCCAGAAGATTTTAAATA TATGATAGAAGCTAATAAGGTTAGCTATTTAAGACAAATAGGAGAAACGATATTTAACTTATTAGATAGTCATGATACTC CAAGAATATTAACTGTTGCTGGAGGAAACAAGAATAAGATGAAACTAGCTTATCTATTTATGTTTACTCAAGCTGGTTCT CCATGTATATATTATGGAGATGAAGTTGGTATGGAAGGAAATCAAGGAATGGGTATGGAATTCCATAGAAGATGTATGAT TTGGGATGAAAATAAACAAGACAAAGATATGCTTAAGTTTATGAAACAAATAATAAAAATAAGAAAAGAAAATAAGGAAT TAAATTTATTAGATAACAATTGGATAAGAGCTAATAGAGATGAAAATATACTTATATATTCAAAGAAAAATATATTCATC ATTATGAACAATTCAGATAAGGAAGAAAAGGTATTTTTACCTAAAGAGATTAAAAATAATAAGGTTAAGGATTTATTTGA AGAAAAAATTGAATCTTTAAAAGAAGATGTAGAATTAAAGCCCTTTGCATTTAGAGTTTATAAAAAGCTTTAA Protein sequence : MSKITREAIHHIAQSNYSYGYDNETLHLRVRTKKGEVNKVEIRIGDPYIWDEGGCDGGNMNATGGRWTGGKSYPMRKECE TKYFDHWIVYYKPLTKRSRYGFILYGDEETLLCTEKRIEELDGKYDEEKLSAIGNFYCFPYLNAIDVAKTPQWVKDTVWY QIFPDRFCNGDKSIDPENVEPWGTEPTRDNFMGGDLQGVLDKLDYLCNLGINGLYFCPVFEATENHRYETIDYFKVDPAL GGNEVFKKLVSEAHKRGMKIMLDAVFNHIGYFSPKWQDVLKNNEKSRYKDWFCIKKFPVLENGLENVDGNNLNYETFGRI ATMPKLNTENPDVVEYLLKVAKFWVEEMDIDGWRLDVCNEVDHVFWRKFREVVKETNKEVYILGEVWHDGLPWLMGDQFD AVMNYPVTDAVKEYFCLNQSNPEDFKYMIEANKVSYLRQIGETIFNLLDSHDTPRILTVAGGNKNKMKLAYLFMFTQAGS PCIYYGDEVGMEGNQGMGMEFHRRCMIWDENKQDKDMLKFMKQIIKIRKENKELNLLDNNWIRANRDENILIYSKKNIFI IMNNSDKEEKVFLPKEIKNNKVKDLFEEKIESLKEDVELKPFAFRVYKKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SPN23F_09660 | YP_002510949.1 | alpha-amylase | Not tested | PPI-1 | Protein | 1e-116 | 47 |
