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Name : clpC (CPR_2437) Accession : YP_699699.1 Strain : Clostridium perfringens SM101 Genome accession: NC_008262 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence MecB/ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.- Position : 2654458 - 2656902 bp Length : 2445 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGCGTCTTGATAATTTTAATGAAAATTCCAAAATAGTAATCAATAAGGGAAAAGAAAGTTCTTTAATGCTAAAACACGG CTACATGGGAACAGAGCATTTATTAATAGGATTAATTAATGAAAATGGACAATGTTCTAAAATTTTGGAAGAAAGCAATG TAACTGAAGAAAAGGTACTTAGTTTTATTAAGCTATATGTTGGAATTGGAGAGGTAAATTATAGTTTAGATGAGGTGCCT TTTACACCTAGATGCAAAAATATTTTAGATAGAAGTGTTGAAATTGCTAAGGAATATGGTCATAGCATTTCAAGACCAGA GCACATATTATTAGCTTTAATAAAAGAAAAAGAAGGTGTAGCTAATTTAATTCTAACTAAAATAGTAAAAAATGATATAA AAAATATAAGTGATAAGTTAAATAATATACTAGGTAGAATTCCAAGTAAGGAAAGTAAAAGCCTTAAAGAAAAAGAAAAA CCAAAAAGAAAAGATACTCCTACATTAAATCTTTATGGTATAAATTTAATAGAAAAGGCAGATAAAAATAAACTTGATCC TGTAATAGGAAGAAAAGATGAAACTCAAAGGCTTTTAGAAATACTTTGTAGAAGAATGAAAAACAACCCTTGTTTAATAG GAGAACCTGGAGTAGGAAAAACTGCCGTTGTGGAGGGCTTAGCTCAAAGAATTCTATTAGGTGAAGTACCAGATATTATT AAGGATAAAAGAATATTTACCTTAGATGTGACTTCTATGTTAGCTGGGGCAAAATATAGAGGAGAATTTGAGGAAAGACT TAAAAAGGTTTTAAAAGAGGTAAAAGATTCAGATGATATAATACTCTTTATAGATGAAATGCATAATATTGTTAGGGCTG GGGGAGCAGAAGGTGCTATAGATGCATCAAATATATTAAAACCAGCTTTAGCAAGAGGTGAAATACAATGTATAGGTGCG ACAACAACTGATGAATATAGAAAAAATATAGAAAAGGATTCTGCTTTAGAGAGAAGATTCCAACCAGTAGTTGTAAAAGA GCCTAGTAAAGAAGATTCCGTATTAATATTAAAGGGATTGAGAGAAAAGTACGAAGTACATCACAATGTAAAATTAACAG ATGAAGCCATAGAGGCAGCTGTTAATTTATCAAGTAGATATATAACAGATAGATTTCTACCAGATAAGGCCATAGATCTA ATAGATGAGGCTGCGGCAAAGGTAAGAATAGAAAGTATGATTGTCCCTCCTAGACTTTTTAAGCAGGAAGAATTAATAGC TAACTTAAAAATTGAAAAAGAAGAAGCTATAAAATTACAGGACTTTGAATTAGCTGCAAAGTTAAGAGATGAAGAATCAA TGTTACAGGAAGAACTAGAGCGAGATAAAGAACTTTGGAGAGAAGAAAATTATAATAAGATTTATGAAGTTAATAAAGAA CATATTGCAAAGGTTGTTTCAAAGTGGACTCAGATACCAGTAGAAAGGCTTACAGAGAAAGAATCAAGTAAACTTCTTAA GCTAGAAGAAAAGCTTAGTAAAAGAGTTATAGGACAATTAGAAGCAATAAAAACCATATCAAAGGCTGTAAGAAGATCAA GGGTAGGTCTTAAAGATCCTAAGAGACCTATTGGATCCTTTGCCTTTTTAGGACCTACTGGAGTAGGAAAAACAGAGCTT TGTAAGGCTTTAGCAGAGGCTATGTTTGGTGATGAGAATAAATTTATTAGGCTTGATATGTCTGAATATATGGAAAAGCA TGGTGTATCTAGACTTATTGGAGCCCCTCCAGGGTATGTTGGATATGAAGAGGGAGGACAACTTACAGAAAAGGTAAGAA GAAATCCTTATTCAGTAATACTTTTTGATGAAATAGAGAAAGCGCATCCAGATATATTTAATATTCTTCTTCAAATATTA GAAGATGGTGTTCTTACAGATGGAAAAGGTAAAACTGTAGATTTTAAGAATACAATAATCATAATGACTTCAAATATTGG AGCAGATAAATTAGATAAGAAAAATGCAGTTGGATTTAGTGCTAAAGAGGATAAGGAACGAGATTATGATAAAATGAAAG GAATTATGTTAGAAGAGCTTAAACAAAATTTTAAACCTGAATTTGTAAATAGATTAGATGACATAGTTGTATTCCATAGT CTAGAAAAGGATCATCTTTTAAAAATTGTTGATCTTATGATATGTTCTCTAAAAGAAAGATTAAATGATTTGCAACTCTC TTTGAATTTTTCTCAAGAGTGTAAAGAATTTTTAGTTAAAAAGGGTACTGAATTAAAATATGGAGCACGTCCACTTAGAA GAGTTATAACTAAATATATTGAAGATAGATTAAGCGAAGAACTTTTAAGTGGAAATATATTAAGAGGATCTAAGGTAGAT GTTTTCTTAGAAGACGAAGTTGTAAAATTTAAAAAAACTGTTTGA Protein sequence : MRLDNFNENSKIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLSFIKLYVGIGEVNYSLDEVP FTPRCKNILDRSVEIAKEYGHSISRPEHILLALIKEKEGVANLILTKIVKNDIKNISDKLNNILGRIPSKESKSLKEKEK PKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIGEPGVGKTAVVEGLAQRILLGEVPDII KDKRIFTLDVTSMLAGAKYRGEFEERLKKVLKEVKDSDDIILFIDEMHNIVRAGGAEGAIDASNILKPALARGEIQCIGA TTTDEYRKNIEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYITDRFLPDKAIDL IDEAAAKVRIESMIVPPRLFKQEELIANLKIEKEEAIKLQDFELAAKLRDEESMLQEELERDKELWREENYNKIYEVNKE HIAKVVSKWTQIPVERLTEKESSKLLKLEEKLSKRVIGQLEAIKTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKTEL CKALAEAMFGDENKFIRLDMSEYMEKHGVSRLIGAPPGYVGYEEGGQLTEKVRRNPYSVILFDEIEKAHPDIFNILLQIL EDGVLTDGKGKTVDFKNTIIIMTSNIGADKLDKKNAVGFSAKEDKERDYDKMKGIMLEELKQNFKPEFVNRLDDIVVFHS LEKDHLLKIVDLMICSLKERLNDLQLSLNFSQECKEFLVKKGTELKYGARPLRRVITKYIEDRLSEELLSGNILRGSKVD VFLEDEVVKFKKTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_699699.1 | negative regulator of genetic competence MecB/ClpC | VFG0079 | Protein | 0.0 | 53 |
| clpC | YP_699699.1 | negative regulator of genetic competence MecB/ClpC | VFG0080 | Protein | 2e-142 | 53 |
