Gene Information

Name : CPR_2272 (CPR_2272)
Accession : YP_699548.1
Strain : Clostridium perfringens SM101
Genome accession: NC_008262
Putative virulence/resistance : Virulence
Product : secretion system protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 2496285 - 2497976 bp
Length : 1692 bp
Strand : -
Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157

DNA sequence :
TTGATTAGTTATCAGAAAAAGCGTTTAGGAGATATACTAATTGAATCGGGAAAGCTTACAGAGGATAGGCTTAAAGAAGC
ATTATTGATTCAGAAGCAAGTTGGCAAGAGGCTTGGAGAGATATTAGTTGAACAAAACTTTGTTACTGAAGAGGATATAA
TAGAAGTTTTAGAAAAACAATTAAATATTGAAAGAGTAAATCTTGAAATTATAACAATAGATAGAAGAGCTATAAAGATG
ATTTCGGAAAATGTTTGTAGAAAGCATTTAATAGTTCCGTATGAAATAGATGATAATACCATAAAGGTTGCAATGGCAGA
TCCCTTAGATATAGTTGCAATAGATGACGTTGAGATTTCTACGGGTTTAAATGTGCGTCCGTATATAGCTGTAAAACAAT
CTATTCAAAGAACTATAGATATATATTATTCAAACCAAAAGGTTTTATTAGCAGCGGAAGAATTAACAAAAGCTTCTGAT
GAAGAAAGTAATGAACTTAATTTAGACAAAATTGAGGAAATAGATAACTTAGATAATGCTCCTATTGTAAAAATGATAGA
GTATGTTATTAAAAATGCAGTTGAGGAAAGAGCTAGTGATATACATATTGAAACTTATGAAAATATATTAAGAATTAGAT
ATAGAATAGATGGTAAGTTACATACAATATCTACTTTGCCAGTAGATACTCTAGCTCCTTTAGTTACTCGTGTTAAAATC
CTAGCTAACTTAGATATATCAGAGAAAAGACTTCCTCAAGATGGAAGAATTCTTACTAAGGTTGGAGATAAGCAAATAGA
CTTAAGGGTATCTATTCTTCCTATGATAACAGGAGAAAAGATAGTTATAAGAATAATAAATAAGGAAAATTTCATAATTT
CTAAGGAAGGACTTGGACTGAAAAATTTTGAGCTTTCTCTGCTAGACAAAATAACAAAGCATTCTAATGGAATAATCCTT
GTTACTGGTCCTACAGGGAGTGGTAAAACAACAACACTCTATACTATTTTAAATGAGCTAAACACAGAAAGTAAAAATAT
TATTACAATAGAAGATCCTGTTGAAGTATCAATTGAAGGAATTAACCAAGTTAACGTCAATACTAAAGTTGGCTTAACAT
TTGCAACTGGATTAAGATCTATATTAAGACAAGACCCTGATACCATAATGGTTGGGGAAATAAGAGATACTGAAACGGCT
CAAATAGCAATAAGATCAGCTATTACAGGTCACTTAGTTTTATCAACTTTACATACTAGTGATGCTCCATCTAGTGTTTT
AAGATTAGAAGATATGGGAGTTCAAAGATATTTGATTGCAAATGCTATTAAGGGAGTTATAGCTCAAAGACTTGTTAGAA
AAATTTGTCCAAATTGTGGACAAACATATGAAGCTACACCATATGAAAAAGAAATATTAAATATAGATGTAAATGAAGAA
GTAATACTTCGTAGAGGAAAAGGGTGTGCTTATTGTAATAATACTGGCTATGTAGGTAGAATGGGTATTTATGAAATTAT
GGAAGTAACTAAGGAACATAGAGATGCTATTTTAGAAAATAAAAGTGCAGATATTCTTAAGGAAATTTCAATTAAGCATG
GTATGAGAACTCTTGGACAATCATGTAGAAGTTTAGTCTTAGAGGGGAATACCACAGTTGAAGAAATGTTAAATATAACT
TATGATATGTAA

Protein sequence :
MISYQKKRLGDILIESGKLTEDRLKEALLIQKQVGKRLGEILVEQNFVTEEDIIEVLEKQLNIERVNLEIITIDRRAIKM
ISENVCRKHLIVPYEIDDNTIKVAMADPLDIVAIDDVEISTGLNVRPYIAVKQSIQRTIDIYYSNQKVLLAAEELTKASD
EESNELNLDKIEEIDNLDNAPIVKMIEYVIKNAVEERASDIHIETYENILRIRYRIDGKLHTISTLPVDTLAPLVTRVKI
LANLDISEKRLPQDGRILTKVGDKQIDLRVSILPMITGEKIVIRIINKENFIISKEGLGLKNFELSLLDKITKHSNGIIL
VTGPTGSGKTTTLYTILNELNTESKNIITIEDPVEVSIEGINQVNVNTKVGLTFATGLRSILRQDPDTIMVGEIRDTETA
QIAIRSAITGHLVLSTLHTSDAPSSVLRLEDMGVQRYLIANAIKGVIAQRLVRKICPNCGQTYEATPYEKEILNIDVNEE
VILRRGKGCAYCNNTGYVGRMGIYEIMEVTKEHRDAILENKSADILKEISIKHGMRTLGQSCRSLVLEGNTTVEEMLNIT
YDM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 3e-84 48
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 2e-84 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPR_2272 YP_699548.1 secretion system protein E VFG2048 Protein 3e-85 48
CPR_2272 YP_699548.1 secretion system protein E VFG1876 Protein 1e-83 45
CPR_2272 YP_699548.1 secretion system protein E VFG0182 Protein 9e-89 45