Name : CPR_2272 (CPR_2272) Accession : YP_699548.1 Strain : Clostridium perfringens SM101 Genome accession: NC_008262 Putative virulence/resistance : Virulence Product : secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2496285 - 2497976 bp Length : 1692 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : TTGATTAGTTATCAGAAAAAGCGTTTAGGAGATATACTAATTGAATCGGGAAAGCTTACAGAGGATAGGCTTAAAGAAGC ATTATTGATTCAGAAGCAAGTTGGCAAGAGGCTTGGAGAGATATTAGTTGAACAAAACTTTGTTACTGAAGAGGATATAA TAGAAGTTTTAGAAAAACAATTAAATATTGAAAGAGTAAATCTTGAAATTATAACAATAGATAGAAGAGCTATAAAGATG ATTTCGGAAAATGTTTGTAGAAAGCATTTAATAGTTCCGTATGAAATAGATGATAATACCATAAAGGTTGCAATGGCAGA TCCCTTAGATATAGTTGCAATAGATGACGTTGAGATTTCTACGGGTTTAAATGTGCGTCCGTATATAGCTGTAAAACAAT CTATTCAAAGAACTATAGATATATATTATTCAAACCAAAAGGTTTTATTAGCAGCGGAAGAATTAACAAAAGCTTCTGAT GAAGAAAGTAATGAACTTAATTTAGACAAAATTGAGGAAATAGATAACTTAGATAATGCTCCTATTGTAAAAATGATAGA GTATGTTATTAAAAATGCAGTTGAGGAAAGAGCTAGTGATATACATATTGAAACTTATGAAAATATATTAAGAATTAGAT ATAGAATAGATGGTAAGTTACATACAATATCTACTTTGCCAGTAGATACTCTAGCTCCTTTAGTTACTCGTGTTAAAATC CTAGCTAACTTAGATATATCAGAGAAAAGACTTCCTCAAGATGGAAGAATTCTTACTAAGGTTGGAGATAAGCAAATAGA CTTAAGGGTATCTATTCTTCCTATGATAACAGGAGAAAAGATAGTTATAAGAATAATAAATAAGGAAAATTTCATAATTT CTAAGGAAGGACTTGGACTGAAAAATTTTGAGCTTTCTCTGCTAGACAAAATAACAAAGCATTCTAATGGAATAATCCTT GTTACTGGTCCTACAGGGAGTGGTAAAACAACAACACTCTATACTATTTTAAATGAGCTAAACACAGAAAGTAAAAATAT TATTACAATAGAAGATCCTGTTGAAGTATCAATTGAAGGAATTAACCAAGTTAACGTCAATACTAAAGTTGGCTTAACAT TTGCAACTGGATTAAGATCTATATTAAGACAAGACCCTGATACCATAATGGTTGGGGAAATAAGAGATACTGAAACGGCT CAAATAGCAATAAGATCAGCTATTACAGGTCACTTAGTTTTATCAACTTTACATACTAGTGATGCTCCATCTAGTGTTTT AAGATTAGAAGATATGGGAGTTCAAAGATATTTGATTGCAAATGCTATTAAGGGAGTTATAGCTCAAAGACTTGTTAGAA AAATTTGTCCAAATTGTGGACAAACATATGAAGCTACACCATATGAAAAAGAAATATTAAATATAGATGTAAATGAAGAA GTAATACTTCGTAGAGGAAAAGGGTGTGCTTATTGTAATAATACTGGCTATGTAGGTAGAATGGGTATTTATGAAATTAT GGAAGTAACTAAGGAACATAGAGATGCTATTTTAGAAAATAAAAGTGCAGATATTCTTAAGGAAATTTCAATTAAGCATG GTATGAGAACTCTTGGACAATCATGTAGAAGTTTAGTCTTAGAGGGGAATACCACAGTTGAAGAAATGTTAAATATAACT TATGATATGTAA Protein sequence : MISYQKKRLGDILIESGKLTEDRLKEALLIQKQVGKRLGEILVEQNFVTEEDIIEVLEKQLNIERVNLEIITIDRRAIKM ISENVCRKHLIVPYEIDDNTIKVAMADPLDIVAIDDVEISTGLNVRPYIAVKQSIQRTIDIYYSNQKVLLAAEELTKASD EESNELNLDKIEEIDNLDNAPIVKMIEYVIKNAVEERASDIHIETYENILRIRYRIDGKLHTISTLPVDTLAPLVTRVKI LANLDISEKRLPQDGRILTKVGDKQIDLRVSILPMITGEKIVIRIINKENFIISKEGLGLKNFELSLLDKITKHSNGIIL VTGPTGSGKTTTLYTILNELNTESKNIITIEDPVEVSIEGINQVNVNTKVGLTFATGLRSILRQDPDTIMVGEIRDTETA QIAIRSAITGHLVLSTLHTSDAPSSVLRLEDMGVQRYLIANAIKGVIAQRLVRKICPNCGQTYEATPYEKEILNIDVNEE VILRRGKGCAYCNNTGYVGRMGIYEIMEVTKEHRDAILENKSADILKEISIKHGMRTLGQSCRSLVLEGNTTVEEMLNIT YDM |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-84 | 48 |
gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-84 | 48 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
CPR_2272 | YP_699548.1 | secretion system protein E | VFG2048 | Protein | 3e-85 | 48 |
CPR_2272 | YP_699548.1 | secretion system protein E | VFG1876 | Protein | 1e-83 | 45 |
CPR_2272 | YP_699548.1 | secretion system protein E | VFG0182 | Protein | 9e-89 | 45 |