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Name : polA (CPR_1962) Accession : YP_699271.1 Strain : Clostridium perfringens SM101 Genome accession: NC_008262 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0749 EC number : 2.7.7.7 Position : 2166242 - 2168842 bp Length : 2601 bp Strand : - Note : has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair DNA sequence : ATGAAAAGATTATTGATATTAGACGGGAACAGTCTTTTAAATAGAGCCTTTTATGCTGTGCCTTTGCTTAGCAATAGTGA AGGAACTCATACAAATGCTATTTATGGTTTTACAAATATGCTTTTTAAGATGAGAGAGGATATAAAACCTGATTATATAG TTTGTACTTTTGATAAAAAAGCACCAACTTTTAGACATTTAGAGTATGGGGATTATAAGGCTGGAAGAAAGAAAATGCCT CCTGAGTTAGCAGAGCAGTTTCCTATTGTTAAGGAAATGCTAAAGTTATTTTCAATAACAACTTACGAATTAGATGGATT CGAAGCAGATGATATTATAGGAAGTTTAGCTAAGGTGGCTGAAGGTGAAGGAATCGAAGTTTATATTATTACTGGAGATA AGGATGCTCTTCAACTAGCAGCTAAGGATATAAACGTATGTATAACTAAGAAGGGTGTTTCTGAAATAGAAGTTTATAAC TATGATAGAATGGTTGAAGAATATGGAGTTACTCCTACTCAGTTCATAGATGTTAAAGGACTTATGGGAGATAAATCTGA TAATATTCCAGGGGTACCAGGAGTAGGAGAAAAAACAGCCTTTAAATTAATAAAAGAGTATGGTTCAGTAGAGGCAGTTT TAGAAAATATAGATAACATAAGTGGTAAAAAGTTAAAAGAAAATTTAACTGAGTACAGCGAACAGGCTATATTCTCTAAA AAGTTAGCTACTATTATGACTAATGTTCCTATAGATTTTGATTTAGATGAGATTAAATCAAAGGATGATTATAATAAAGA TCAGTTAAAAGCTTTATTTACAAAGCTTCAAATGAAATCTATATTAGATAAATTATCAAATGGGGAAGAAGAAGAGCCAG AAATAGAAGTTAAAATAACTAATATAGAAAATAATAAAAAATTAGAAGATTTATTTAATAATATAAACGAAGAAGTATAT ATTAATTTTACTTATTTAAATAAAGAAAAGTATTCTACTATAGAGATTGATAAAATATTTATTAATTATGATGAGAAAAA TTATTTAATTAACTTTAAAGAGTTAGCACAAGAAGAGGAGAATATTAAAGCCCTTAAAGAATTTTTTGAGAATGAAGATA TATTAAAAAATGGCTATAGTATAAAAAATGCCTTAACAGCATTAAAAAAATTAGGGATAGAATTTAAGGGATTAGCCTTT GATTGTGAATTAGCAGCATATTTAATAGATTCATCTAAGGGAGAATATACTCTTTTATCCTTAATAAATAACTATCTTTC AAAATTCCCTAATGTAAAAGATGGAGAGGAAGACTTAGTTGGAATTTCATTTATGAAAGAGTTGACTTTAGTTCTAAAGA AAAAGATAGAAGAAGAGAAAATGGAAAGACTTATGTATGATATTGAGCTTCCTTTAGAAACAGTTTTATCTTCTATGGAA TCAATAGGATTTAAAGTAAATAAAGATATTTTAGATGAGTTATCTATTAAGTTTAAAAGAGAGTTAGAGGAAACACAAAA AGAGATCTTTGAACTTGCAGATGAAGAGTTTAATATAAATTCTCCAAAACAATTAGGTAAGATATTATTTGAAAAATTAG ATTTACCAGTTATAAAGAAAACTAAAACTGGATATTCAACTAACGCAGAAGTATTAGAAAAGCTTAAGGACAAACATCCT ATAATAGAAAAAATAACATATTTTAGACAGCTTTCAAAAATATATTCAACTTATGTTGAAGGATTAAAGTCTGTTATAGA TACAGATGGTTCTATACATTCAACATTTAATCAAACTGTAACTACTACAGGTAGACTTTCATCAACAGAGCCTAATCTTC AAAATATACCTATAAAATATGAAATGGGTAGAGAAATAAGAAAGGTATTTATACCAAAAGAAGAAGGAGATTTATTAATA TCAGCTGACTACTCACAAATAGAACTTAGAGTTTTAGCTCATATTTCTGGTGATGAAAATATGATAGATGCATTTAATCA TCATTCAGATATACACACTAAGACTGCTTCTGAAGTGTTTAAAGTACCAGTTGAAGAGGTAACTCCATTAATGAGAAGTA GGGCTAAGGCAGTAAACTTTGGTATAGTATATGGAATCGGAGATTTTAGTCTTTCACAGGATTTAAATATTTCAAGAAAA GAAGCTAAAGAATATATGGATATATATTTTGAAAGATATCCAAAAATTAAAGAGTATATTTCTAAGGTTATTCATGAAGC TCAAACAAAGGGATATGTATTAACTATGTTAAATAGAAGAAGATATATACCTGAAGCAAATGCTTCAAATAAAATAGTAA AAGCCCTAGGAGAAAGACTTGCAATGAATGCTCCAATACAAGGAACAGCAGCAGATATAATAAAGCTTGCTATGGTAAAT GTATATAACAAGTTAAAAGAATTAAATTTAAATAGTAAGTTAATATTACAAGTTCATGATGAACTTATAATAAATGTTGT CAAAGGAGAATTAGACATTGTTAAGAAACTTCTAAAAGAGGAAATGGAAAATACAATTAAATTAAGTGTACCATTAGATG TTGATGTTAATGTTGGAGAAGATTGGTATAAGTTAAAATAA Protein sequence : MKRLLILDGNSLLNRAFYAVPLLSNSEGTHTNAIYGFTNMLFKMREDIKPDYIVCTFDKKAPTFRHLEYGDYKAGRKKMP PELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLAKVAEGEGIEVYIITGDKDALQLAAKDINVCITKKGVSEIEVYN YDRMVEEYGVTPTQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAIFSK KLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLSNGEEEEPEIEVKITNIENNKKLEDLFNNINEEVY INFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELAQEEENIKALKEFFENEDILKNGYSIKNALTALKKLGIEFKGLAF DCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKDGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSSME SIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHP IIEKITYFRQLSKIYSTYVEGLKSVIDTDGSIHSTFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKEEGDLLI SADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRK EAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVN VYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKLLKEEMENTIKLSVPLDVDVNVGEDWYKLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 2e-154 | 44 |
