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Name : CPF_0623 (CPF_0623) Accession : YP_695076.1 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Virulence Product : DNA-binding response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 750608 - 751303 bp Length : 696 bp Strand : + Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486 DNA sequence : ATGACAAATAAAAAAGTCCTAATAGTAGATGATGAGGAACATATTAGAGAACTTATAAAATTTAATTTAAAAAAAGAGGG ATATGATACAGAAGTTGCTGTTAATGGAACTGAAGCTCTAAAGCTTATAAGAGAAATTAAGTTTGATTTAATACTTTTAG ATTTAATGCTTCCAGAAATAGATGGCTTAGAAGTATGTAAAGAAATTAGAAGAAATGAAGAAACTTCAGATATTCCAGTA ATGATGATTACAGCAAAGGGGGAAGAGTTTGATAAAGTATTAGGCTTAGAACTTGGAGCAGATGATTATATAACAAAGCC ATTTTCAATAAGAGAACTTATGGCTAGAGTAAAAGCTTTACTTAGAAGAAGTAATGTTAAAAAAGAAGAAAATATAATTA AATTTGGTGATGTAGTAGTTAATTTTAAAACAAGAGAAGTAACAAAAGGAACTCAAAATGTAGAATTAACATTAAAGGAG TTTGAATTATTAAAGCTTCTTATAAAGAATAAGGGCAATATATTAACTAGAGAACTTTTGCTTGATAAAATTTGGGGATA TGAATACATAGGTGAAACAAGAACAGTAGATGTTCATATTAGACATTTACGCAAAAAGATTGAAAGTGATGATAAAAATC CTCAATATATTCAAACTATAAGAGGAGTTGGATATAAGTTTACAAGCAATGAATAA Protein sequence : MTNKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGLEVCKEIRRNEETSDIPV MMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRSNVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKE FELLKLLIKNKGNILTRELLLDKIWGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD42044.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 8e-35 | 42 |
| c3565 | NP_755440.1 | response regulator | Not tested | PAI I CFT073 | Protein | 2e-34 | 42 |
| vanRB | YP_001698483.1 | regulatory protein | Not tested | Not named | Protein | 4e-27 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_012469.1.7686381. | Protein | 1e-47 | 55 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_012469.1.7685629. | Protein | 7e-45 | 54 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002952.2859905.p0 | Protein | 1e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002951.3237708.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_007622.3794472.p0 | Protein | 1e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002758.1121668.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_009641.5332272.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_013450.8614421.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_007793.3914279.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_003923.1003749.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002745.1124361.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_009782.5559369.p0 | Protein | 2e-43 | 52 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | HE999704.1.gene2815. | Protein | 4e-41 | 50 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | AE016830.1.gene1681. | Protein | 3e-41 | 48 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_014475.1.orf0.gen | Protein | 3e-33 | 46 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_005054.2598277.p0 | Protein | 3e-33 | 46 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | AE000516.2.gene3505. | Protein | 4e-38 | 44 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_003923.1003417.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_013450.8614146.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002951.3238224.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_007793.3914065.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002758.1121390.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_010079.5776364.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002952.2859858.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_007622.3794948.p0 | Protein | 1e-34 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | AF155139.2.orf0.gene | Protein | 3e-33 | 43 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | HE999704.1.gene1202. | Protein | 1e-27 | 42 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | DQ212986.1.gene4.p01 | Protein | 1e-29 | 42 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | AE015929.1.gene1106. | Protein | 2e-31 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | FJ349556.1.orf0.gene | Protein | 1e-33 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | AM180355.1.gene1830. | Protein | 3e-28 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | NC_002695.1.916589.p | Protein | 2e-31 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | BAC0596 | Protein | 3e-31 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | BAC0039 | Protein | 3e-31 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | CP001138.1.gene2239. | Protein | 3e-31 | 41 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | CP000034.1.gene2186. | Protein | 3e-31 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | VFG1563 | Protein | 5e-35 | 42 |
| CPF_0623 | YP_695076.1 | DNA-binding response regulator | VFG1702 | Protein | 8e-35 | 42 |
