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Name : treC (CPF_0542) Accession : YP_694996.2 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Unknown Product : alpha,alpha-phosphotrehalase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : 3.2.1.93 Position : 645087 - 646754 bp Length : 1668 bp Strand : + Note : identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 DNA sequence : ATGAAAGATTTTAAGAAAAGTGTTGTTTATCAGATATATCCAAAATCATTTAAGGATTCAAATGGAGATGGTCTTGGAGA TTTAAGAGGAGTAATTGAAAAATTAGATTATCTTAAAAATTTAGGAGTAGATTATATTTGGATGACTCCATTTTATGTAT CTCCTCAAAAAGATAATGGATATGATATAGCAGATTATTATAAAATTGATCCTAGATATGGAACTATGGAAGATTTTGAA GAATTGGTTAAAGAAGCTAAAGGCAGAAATATAGATATTATGCTTGATATGGTTTTTAATCATACTTCTACAGAGCATGA ATGGTTTAAAAGAGCTTTAAAGGGCGAAGAAAAATATAAAAATTATTACATTTTTAAAGAAGGAAAAAAAGGAGAACCAC CAACAAATTGGATTTCAAAGTTTGGAGGGAATGCTTGGGAGTATGTTGAGGAGCTAGGAGAGTATTACCTACATTTATTT GATGTTTCACAGGCTGATTTAAACTGGGATAATAAAGAATTAAGAGAAGAAATCTATAAAGTGGTGAATTTCTGGATAGA TAAAGGGGTTAAAGGATTTAGATTAGATGTTATAAACCTTATTTCTAAGCCAGAAAAATTTGAAAATGATTATGAAGGAG ATGGAAGAAGATTTTATACTGATGGGCATAGAATACATGAGTATTTAAAAGAACTTAATGAAAGAACTTTTGGTAAAGAT GTAGAAATAGTAACTGTTGGTGAAATGTCATCAACAACTATAGAAAACTGTATAAAATATTCTAATCCTAAGGAAAAAGA ATTATCAATGGTATTTAATTTTCATCATTTAAAGGTTGATTATAAAGATGGTCAAAAATGGTCTTTAATGGATTTTGATT TTATTGAATTAAAAAAACTTTTTAATAATTGGCAAAGAGGAATGATTAATGGAGGAGGCTGGAATGCTGTTTTTTGGTGT AACCACGATCAACCAAGAGTTAATTCAAGATTTGGAGATGTAAAGAAATACTTTAATGAATCTTCAAAAATGCTAGCGAC TTCAATTCATATGATGAGTGGAACTCCTTATGTATATCAAGGAGAAGAAATTGGAATGACAAATCCAGGTTTTGAAAGTA TTGAAGAATATAGAGATGTAGAATCAATAAACTATTTCAATATTTTAAAAGAAGAGGAAATTGATGAAAAAGAAATAATG GAAATCCTTAAGAGCAAATCAAGAGATAACTCAAGAACTCCTGTTCAATGGAATGAAGAAAAAAATGCTGGGTTTACTAC AGGAACTCCTTGGATAAATATTGCTAATAATTATAGAGAAATAAATGTTGAAAGAGCTTTAGAAAATAAGGATTCTGTAT TTTATCATTATAAGAAACTTATTGAATTAAGAAAGAATGAAGATGTAATAGCCTATGGAGATTACATTCAGTTTTTAGAA GATCATCCTAAAGTTTATGCTTATGAAAGAAATTATAATGGTGAAAAGTTACTTGTTATAAATAACTTCTATGGAGAAGA GTGCTTAGTAGATTTATCAAAGGAAATTGAAGGGCTAGAAAATTACAATAAGAGTATTTTAATATCTAATTATAAGGATA GTACATTAGATTTATTAAGTTTAAAGTTAAGACCATATGAATCAATAGTTTATAAATTAGAAAAGTAA Protein sequence : MKDFKKSVVYQIYPKSFKDSNGDGLGDLRGVIEKLDYLKNLGVDYIWMTPFYVSPQKDNGYDIADYYKIDPRYGTMEDFE ELVKEAKGRNIDIMLDMVFNHTSTEHEWFKRALKGEEKYKNYYIFKEGKKGEPPTNWISKFGGNAWEYVEELGEYYLHLF DVSQADLNWDNKELREEIYKVVNFWIDKGVKGFRLDVINLISKPEKFENDYEGDGRRFYTDGHRIHEYLKELNERTFGKD VEIVTVGEMSSTTIENCIKYSNPKEKELSMVFNFHHLKVDYKDGQKWSLMDFDFIELKKLFNNWQRGMINGGGWNAVFWC NHDQPRVNSRFGDVKKYFNESSKMLATSIHMMSGTPYVYQGEEIGMTNPGFESIEEYRDVESINYFNILKEEEIDEKEIM EILKSKSRDNSRTPVQWNEEKNAGFTTGTPWINIANNYREINVERALENKDSVFYHYKKLIELRKNEDVIAYGDYIQFLE DHPKVYAYERNYNGEKLLVINNFYGEECLVDLSKEIEGLENYNKSILISNYKDSTLDLLSLKLRPYESIVYKLEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 7e-116 | 46 |
