Gene Information

Name : CPF_0466 (CPF_0466)
Accession : YP_694923.1
Strain : Clostridium perfringens ATCC 13124
Genome accession: NC_008261
Putative virulence/resistance : Virulence
Product : capsular polysaccharide biosynthesis protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2148
EC number : -
Position : 553078 - 553746 bp
Length : 669 bp
Strand : +
Note : identified by match to protein family HMM PF02397

DNA sequence : 
ATGTATGAATCTATGGAGAAGGTTCAAGAAGAAAAAGAATATATAAAAGCAGACCAAGGAAATAGAATATACTTGTTTTT
TAAGAGATTAATAGATATCCTTGGAGCTAGCTTTGGATTAATCATATTAAGTCCAGTATTTTTAATTGTAGCAATAGCTA
TAAAAATTGAAGATAGCAAGGGTAGCGTACTATTTTCACAAAAAAGAGTTGGACAGTATGGTAAAGAATTTAATATGTAC
AAATTTAGATCCATGGTTAGTAATGCAGAAGAGCTTAAAGCTAAGCTTATGGAAAAAAACGAAATGTCAGGACCTATGTT
TAAAATGAAACATGATCCTAGAATAACTAAGGTTGGAAAGTTTATAAGAAAGACTAGTATAGATGAACTTCCTCAGCTTA
TAAATATTCTTAAGGGTGAAATGAGCTTAGTTGGTCCTAGACCAAGCCTTCCAAAGGAAGTAGCTAAATTTGAACCCTGG
ATGTTAGAAAGGCTAGAAGTGAAGCCGGGATTAACATGTTATTGGCAAGTTATGGGGAGAAATGATATAGATTTTGAAGA
TTGGATGAAGCTGGATATAAAGTATGTCCATGATAGAAATTTTTGGCTAGATATAAAGTTAATTTTTAAAACGTTTTTTG
TGCTTTTTGGAGATGAAAGTGCGAGTTAA

Protein sequence : 
MYESMEKVQEEKEYIKADQGNRIYLFFKRLIDILGASFGLIILSPVFLIVAIAIKIEDSKGSVLFSQKRVGQYGKEFNMY
KFRSMVSNAEELKAKLMEKNEMSGPMFKMKHDPRITKVGKFIRKTSIDELPQLINILKGEMSLVGPRPSLPKEVAKFEPW
MLERLEVKPGLTCYWQVMGRNDIDFEDWMKLDIKYVHDRNFWLDIKLIFKTFFVLFGDESAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0070 YP_300160.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-26 44
cap1N AAL26667.1 type 8 capsule synthesis gene Virulence SCCcap1 Protein 1e-26 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_0466 YP_694923.1 capsular polysaccharide biosynthesis protein VFG1369 Protein 3e-17 45
CPF_0466 YP_694923.1 capsular polysaccharide biosynthesis protein VFG1309 Protein 1e-27 42