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Name : clpC (CPF_2751) Accession : YP_697129.1 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence MecB/ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.- Position : 3010907 - 3013351 bp Length : 2445 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGCGTCTTGATAATTTTAATGAAAATTCCAAAATAGTAATCAATAAGGGAAAAGAAAGTTCTTTAATGCTAAAACACGG CTACATGGGAACAGAGCATTTATTAATAGGATTAATTAATGAAAATGGACAATGTTCTAAAATTTTGGAAGAAAGCAATG TAACTGAAGAAAAGGTACTTAGTTTTATTAAGCTATATGTTGGAATTGGAGAGGTAAATTATAGTTTGGATGAGGTGCCT TTTACACCTAGATGCAAAAAGATTTTAGATAGAAGTGTTGAAATTGCTAAGGAATATGGTCATAGCATTTCAAGACCAGA GCACATATTATTAGCCTTAATAAAAGAAAGAGAAGGTGTAGCTAATTTAATTCTAACTAAAATAGTAAAAAATGATATAA AAAATATAAGCGATAAGTTAAATAACATACTAGGTAGAATTCCAAGTAAGGAAAGTAAAAGCCTTAAAGAAAAGGAAAAA CCAAAAAGAAAAGATACTCCTACATTAAATCTTTATGGTATAAATTTAATAGAAAAGGCAGATAAAAATAAACTTGATCC TGTAATAGGGAGAAAGGATGAAACTCAAAGACTTTTAGAAATACTTTGTAGAAGAATGAAAAACAATCCTTGTTTAATAG GAGAACCTGGAGTAGGAAAAACTGCCGTTGTAGAAGGATTAGCTCAAAGAATTCTATTAGGTGAAGTACCAGATATTATT AAGGATAAAAGAATATTTACCTTAGATGTGACTTCTATGTTAGCTGGGGCAAAATATAGAGGAGAATTTGAGGAAAGACT TAAAAAGGTTTTAAACGAAGTAAAAGATTCAGATGATATAATACTCTTTATAGATGAAATGCATAATATTGTTGGGGCTG GGGGAGCAGAAGGTGCTATAGATGCATCAAATATATTAAAACCAGCTTTAGCAAGAGGTGAAATACAATGTATAGGTGCA ACAACAACTGATGAATATAGAAAAAATATAGAAAAGGATTCTGCTTTGGAGAGAAGATTTCAACCAGTAGTTGTAAAAGA GCCTAGTAAAGAAGATTCCGTATTAATATTAAAGGGATTAAGAGAAAAGTATGAAGTACATCACAATGTAAAATTAACAG ATGAAGCCATAGAGGCAGCTGTTAATTTATCAAGTAGATATATAACCGATAGATTTCTACCAGATAAGGCCATAGATCTA ATAGATGAGGCTGCGGCTAAGGTAAGAATAGAAAGTATGATTGTTCCTCCTAGACTTTTTAAGCAGGAAGAATTAATAGC TAACTTAAAAATTGAAAAAGAAGAAGCTATAAAATTACAGGACTTTGAATTAGCTGCAAAGTTAAGAGATGAAGAATCAA TGTTACAGGAAGAACTAGAGCGAGATAAAGAACTTTGGAGAGAAGAAAATTACAATAAAATCTACGAAGTTAATAAAGAA CATATTGCAAAGGTTGTTTCAAAGTGGACTCAGATACCAGTAGAAAGGCTTACAGAGAAAGAATCAAGTAAACTTCTTAA GCTGGAAGAAAAGCTTAGTAAAAGAGTTATAGGACAATTAGAAGCAATAAGAACCATATCTAAAGCTGTAAGAAGATCAA GGGTAGGTCTTAAAGATCCTAAGAGACCTATTGGATCCTTTGCCTTTTTAGGACCTACTGGAGTAGGAAAAACAGAGCTT TGTAAGGCTTTAGCAGAGGCTATGTTTGGTGATGAGAATAAATTTATTAGGCTTGATATGTCTGAATACATGGAAAAGCA TGGTGTATCTAGACTTATTGGAGCTCCCCCAGGATATGTAGGATATGAAGAGGGAGGACAACTTACAGAAAAGGTAAGAA GAAATCCTTACTCAGTAATACTTTTTGATGAAATAGAAAAAGCACATCCAGATATATTTAATGTTCTTCTTCAAATATTA GAAGATGGTGTTCTTACAGATGGAAAAGGTAAAACAGTAGATTTTAAGAATACAATAATCATAATGACTTCAAATATTGG AGCAGATAAATTAGATAAGAAAAATGCAGTTGGATTTAGTGCTAAAGAGGATAAGGAACGAGATTATGATAAGATGAAAG GAATTATGTTAGAAGAGCTAAAACAAAATTTCAAACCTGAATTTGTAAATAGATTAGATGACATAGTTGTATTCCATAGT CTAGAAAAGGATCATCTTTTAAAAATTGTTGATCTTATGATATGTTCTCTAAAAGAGAGGTTAAATGATTTACAACTTTC TTTGAATTTTTCTCAAGAGTGTAAAGAATTTTTAGTTAAAAAGGGCACTGAATTAAAATATGGAGCACGTCCATTAAGAA GAGTTATAACTAAATATATTGAAGATAGATTAAGTGAAGAACTTTTAAGTGGAAATATATTAAGAGGATCTAAGGTAGAT GTTTTCTTAGAAGACGACGTTGTAAAATTTAAAAAAACTGTTTGA Protein sequence : MRLDNFNENSKIVINKGKESSLMLKHGYMGTEHLLIGLINENGQCSKILEESNVTEEKVLSFIKLYVGIGEVNYSLDEVP FTPRCKKILDRSVEIAKEYGHSISRPEHILLALIKEREGVANLILTKIVKNDIKNISDKLNNILGRIPSKESKSLKEKEK PKRKDTPTLNLYGINLIEKADKNKLDPVIGRKDETQRLLEILCRRMKNNPCLIGEPGVGKTAVVEGLAQRILLGEVPDII KDKRIFTLDVTSMLAGAKYRGEFEERLKKVLNEVKDSDDIILFIDEMHNIVGAGGAEGAIDASNILKPALARGEIQCIGA TTTDEYRKNIEKDSALERRFQPVVVKEPSKEDSVLILKGLREKYEVHHNVKLTDEAIEAAVNLSSRYITDRFLPDKAIDL IDEAAAKVRIESMIVPPRLFKQEELIANLKIEKEEAIKLQDFELAAKLRDEESMLQEELERDKELWREENYNKIYEVNKE HIAKVVSKWTQIPVERLTEKESSKLLKLEEKLSKRVIGQLEAIRTISKAVRRSRVGLKDPKRPIGSFAFLGPTGVGKTEL CKALAEAMFGDENKFIRLDMSEYMEKHGVSRLIGAPPGYVGYEEGGQLTEKVRRNPYSVILFDEIEKAHPDIFNVLLQIL EDGVLTDGKGKTVDFKNTIIIMTSNIGADKLDKKNAVGFSAKEDKERDYDKMKGIMLEELKQNFKPEFVNRLDDIVVFHS LEKDHLLKIVDLMICSLKERLNDLQLSLNFSQECKEFLVKKGTELKYGARPLRRVITKYIEDRLSEELLSGNILRGSKVD VFLEDDVVKFKKTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-89 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_697129.1 | negative regulator of genetic competence MecB/ClpC | VFG0079 | Protein | 0.0 | 53 |
| clpC | YP_697129.1 | negative regulator of genetic competence MecB/ClpC | VFG0080 | Protein | 2e-149 | 53 |
