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Name : CPF_2570 (CPF_2570) Accession : YP_696960.1 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Virulence Product : secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2834874 - 2836562 bp Length : 1689 bp Strand : - Note : identified by match to protein family HMM PF00437; match to protein family HMM PF05157 DNA sequence : TTGATTAGTTATCAGAAAAAGCGTTTAGGAGATATACTAATTGAATCAGGAAAGCTTACAGAGGATAAGCTTAAAGAAGC ATTGATTATTCAGAAGCAGGTTGGAAAGAGGCTTGGAGAAATTTTAGTTGAACAAAACTTTGTTACTGAAGAGGATATAA TAGAAGTTTTAGAAAAACAATTAAATATTGAAAGAGTAAATCTTGAAATTATAAGAATAGATAGAAGAGCTATAAAGATG ATTTCAGAAAATGTTTGTAGAAAGCATTTAATAGTTCCATATGAAATAGATGATAATACCATAAAAGTTGCAATGGCAGA TCCCTTAGATATAGTTGCAATAGATGATGTTGAGATTTCTACAGGTTTAAATGTGCGTCCTTATATAGCAGTAAAACAAT CTATTCAAAGAGCTATAGATATATATTATTCAAACCAAAAGGTTTTATCAGCAGCGGAAGAATTAACTAAGGAAGTTGAT GAAGGAAATAATCTTATTTTAGATAATATTGAAGAAGTTGATAACTTAGATAATGCTCCAATTATAAAAATGATTGAATA TGTAATGAAAAATGCAGTAGAGGAAAGAGCTAGTGATATACATATTGAAAGCTATGAAAATATATTAAGAATTAGATATA GAATAGATGGTAAATTACATACAATATCTACTTTGCCAGTAGATACCCTAGCTCCCTTAGTTACTCGTATTAAAATTTTA GCAAACTTAGACATATCAGAGAAAAGACTTCCTCAAGATGGAAGAATTCTTACTAGATTTGGAGATAAACAAATTGATTT AAGAGTATCTATTCTTCCAATGATAACAGGAGAAAAGATAGTTATAAGAATAATAAATAAAGAAAATTTCATAATTTCTA AGGAAGGGCTTGGAATAAAGGACTATGAACTTAATTTATTAGAAAAAATAACAAAGCATTCTAATGGAATAATTCTTGTT ACAGGTCCTACAGGAAGTGGTAAAACAACAACGCTCTATACTATTTTAAATGAGCTAAATACAGATAGTAAAAATATTAT TACTATAGAAGATCCTGTTGAAGTATCAATTGAAGGAATTAACCAAGTTAATGTTAATAATAAAGTGGGGTTAACTTTTG CAACGGGATTAAGATCTATATTAAGACAGGATCCAGATATAATAATGATTGGAGAAATAAGAGATTCTGAAACGGCTCAA ATAGCAATAAGATCAGCTATTACAGGTCATTTAGTTTTATCAACTTTACATACTAATAATGCTCCATCTAGTATTTTAAG ACTTGAGGATATGGGGGTTCAAAGATATTTAATTGCCAATGCTATTAAAGGAGTTATAGCTCAAAGACTTGTTAGAAAAA TTTGTCCAAAGTGTAAATTACAATATGATGCTACACCATATGAAAAAGAAATATTAAATATAGATAAAAATGAAGAACTT ATACTTCATAAAGGTAAAGGTTGTGCTTATTGTAATAATACTGGTTATGTAGGTAGAATGGGTATTTATGAAATTATGGA AGTGACTAAAGAACATAGAGAGGCTATTTTAGAAAATAAAAGTGCGGATATTCTTAAGGAGATTTCAATTAAAAATGGCA TGAGAACTCTTGGACAAGCATGTAGAAGTTTAGTCTTAGAGGGAAATACCACAGTTGAAGAAATGTTAAATATAACTTAT GATATGTAA Protein sequence : MISYQKKRLGDILIESGKLTEDKLKEALIIQKQVGKRLGEILVEQNFVTEEDIIEVLEKQLNIERVNLEIIRIDRRAIKM ISENVCRKHLIVPYEIDDNTIKVAMADPLDIVAIDDVEISTGLNVRPYIAVKQSIQRAIDIYYSNQKVLSAAEELTKEVD EGNNLILDNIEEVDNLDNAPIIKMIEYVMKNAVEERASDIHIESYENILRIRYRIDGKLHTISTLPVDTLAPLVTRIKIL ANLDISEKRLPQDGRILTRFGDKQIDLRVSILPMITGEKIVIRIINKENFIISKEGLGIKDYELNLLEKITKHSNGIILV TGPTGSGKTTTLYTILNELNTDSKNIITIEDPVEVSIEGINQVNVNNKVGLTFATGLRSILRQDPDIIMIGEIRDSETAQ IAIRSAITGHLVLSTLHTNNAPSSILRLEDMGVQRYLIANAIKGVIAQRLVRKICPKCKLQYDATPYEKEILNIDKNEEL ILHKGKGCAYCNNTGYVGRMGIYEIMEVTKEHREAILENKSADILKEISIKNGMRTLGQACRSLVLEGNTTVEEMLNITY DM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-84 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CPF_2570 | YP_696960.1 | secretion system protein E | VFG1876 | Protein | 3e-85 | 45 |
| CPF_2570 | YP_696960.1 | secretion system protein E | VFG0182 | Protein | 9e-91 | 45 |
| CPF_2570 | YP_696960.1 | secretion system protein E | VFG2048 | Protein | 7e-86 | 42 |
