Gene Information

Name : CPF_0215 (CPF_0215)
Accession : YP_694678.1
Strain : Clostridium perfringens ATCC 13124
Genome accession: NC_008261
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 264352 - 265131 bp
Length : 780 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATTAGAGGGGAAAAATTATCATTCAATTACAAGGGAGAAAAAAATATCATTAATGATTTAAATATAGATATAAAAGA
GGGAGAAATAACAACTATTATTGGCCCTAATGGAAGTGGAAAATCAACTTTGCTAAGTCTATTATGTGCTTTAAATAAAA
GTAAAACTGGACATGTTTATTTGGGGGATATAAACATGAACAATCTTAAATATAAGGATATAGCAAAGATTTTAGCAACT
GTTCATCAACAAAATAGTGTGCCAAAGGATATAAAGGTTGAGGAGCTTGTTGCCTATGGTAGATATCCTCATAAAGGATA
TTTTAAAAGTAACAACAAGGAAGATAAAAACATAATTAAATGGGCTTTAGAATGTACAGGACTTGATGATTTAAAACATA
AGGGAGTTATGAATTTATCAGGGGGAGAAAGACAAAGAGCTTTTATATCAATGGCTTTAGCTCAAAAGCCTAAAATTTTA
TTTTTAGATGAGCCAACAACTTATTTAGATATTTTTCATCAAATAGAAATATTAGAGATTGTAAAAAAGTTAAATAAGTA
TAATGGGCTAACTGTTGTTATGGTTTTACATGATATAAATCAAGCAATTAAATATAGTCATAATATTGTTGTCATGAAAG
ATGGAAAAATTGTAAAAGAGGGAAAATCAGAGAATGTAATAGATGAAAATTTATTAAAGGAAGTTTATAAGGTTAATGGT
GTTATTAACAAATGTAAGGAAACTGGAGAGACTTATTTTATACCAAAAACTATTTGTTAA

Protein sequence : 
MIRGEKLSFNYKGEKNIINDLNIDIKEGEITTIIGPNGSGKSTLLSLLCALNKSKTGHVYLGDINMNNLKYKDIAKILAT
VHQQNSVPKDIKVEELVAYGRYPHKGYFKSNNKEDKNIIKWALECTGLDDLKHKGVMNLSGGERQRAFISMALAQKPKIL
FLDEPTTYLDIFHQIEILEIVKKLNKYNGLTVVMVLHDINQAIKYSHNIVVMKDGKIVKEGKSENVIDENLLKEVYKVNG
VINKCKETGETYFIPKTIC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-43 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-43 46
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-41 44
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-40 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-40 42
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-42 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_0215 YP_694678.1 iron ABC transporter ATP-binding protein VFG0925 Protein 7e-45 41