Gene Information

Name : CPF_2180 (CPF_2180)
Accession : YP_696604.1
Strain : Clostridium perfringens ATCC 13124
Genome accession: NC_008261
Putative virulence/resistance : Resistance
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2419541 - 2420212 bp
Length : 672 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGAATAAAACGGTACTTATTGTAGAAGATGAAATACGTATAAGATTTCTTGTAAGAGATTACTTCAAGAAAGAGGGATT
TAATGTGTTAGAAGCTTCTGATGGTGAGGAAGCTCTTAGGATATTTTCTGAAAATATAGTTGATTTAGCAATATTAGATA
TAATGATGCCAAAATTAGATGGACTTGCTGTTTGTAGAAATATAAGGGAAGTTTCAAATACTCCTATAATATTATTAACA
GCTAAAAGCCAAGAGGAAGATAAACTTTTAGGTTATGAGCTTGGAGCTGATGATTATATGACTAAACCCTTTAGCCCTAA
GGTTTTATTAGCAAAAGCTAAAGCATTATTAAGAAGAACAGGTACATTAAATGATAAAAACATTTTAGATTTTAATGGAT
TAACAATAAATAAACTATCTCATGAAGTAAAACTAAATGGAGAAGAACTATTACTATCTCCTAAGGAATATGATTTACTT
ATTTACCTTTCTTCAAATGAAGGAATAGCTTTATCAAGGGATAGAATTCTAGATAATGTTTGGGGCTATGATTATTTTGG
AGATATAAGAACAGTTGATACGAACATAAAAAGACTTAGAGAGAAATTACTAGATAAAGCTAATTATATAGCTACTGTTA
GGGGAAGTGGCTATAAGTTTGAGGTGAAATAG

Protein sequence : 
MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAVCRNIREVSNTPIILLT
AKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLL
IYLSSNEGIALSRDRILDNVWGYDYFGDIRTVDTNIKRLREKLLDKANYIATVRGSGYKFEVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_2180 YP_696604.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 5e-31 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 3e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 3e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 4e-37 45
CPF_2180 YP_696604.1 DNA-binding response regulator NC_012469.1.7685629. Protein 2e-38 45
CPF_2180 YP_696604.1 DNA-binding response regulator AE015929.1.gene1106. Protein 1e-26 44
CPF_2180 YP_696604.1 DNA-binding response regulator NC_012469.1.7686381. Protein 8e-36 44
CPF_2180 YP_696604.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 4e-36 44
CPF_2180 YP_696604.1 DNA-binding response regulator FJ349556.1.orf0.gene Protein 1e-34 43
CPF_2180 YP_696604.1 DNA-binding response regulator HE999704.1.gene2815. Protein 1e-34 43
CPF_2180 YP_696604.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 3e-35 42
CPF_2180 YP_696604.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 5e-34 42
CPF_2180 YP_696604.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 5e-34 42
CPF_2180 YP_696604.1 DNA-binding response regulator AF310956.2.orf0.gene Protein 1e-30 41
CPF_2180 YP_696604.1 DNA-binding response regulator AM180355.1.gene1830. Protein 1e-35 41