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Name : serS (CPF_0014) Accession : YP_694487.1 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 21265 - 22542 bp Length : 1278 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATTTAAAAAAGTTAAGAAGTAATACTGAAGAAGTGAAAAAAGCTTTATCTAATAGAGGAGAAGACTTTGATGT AAATGTTATAGACGAAGTTATAGCTTTAGATGAAGAAAGAAGAAAAATTTTAGTTGATGTTGAGGCTTTAAAGAAACAAA GAAACGAAGTATCAGCTGAAATTCCAAAGAGAAAAAAAGCTGGAGAAGACGTTACAGAAGTAATGGCTGAAATGAGAGAA ATAGGGGGTAAAATAAAGGCTGATGATGCTAAAGTTGCTGAGTTAAACGATAAAATTAACTACATCATGCTAAGAATTCC TAATATACCAAACCCAGCTGTTCCAGAAGGGGAAACTGATGAGGACAATGTTGAAATAAAAAGATGGGGAGAACCTACTA AATTCAACTTTGAACCAAAAGCACACTGGGATTTAGGAACAGATTTAGATCTTTTAGACTTCGAAAGAGGTGGAAAGGTT GCTGGATCAAGATTTACAGTTTACAAAGGAATGGGTGCTAGATTAGAGAGATCTATAATAAACTACTTCTTAGATAAACA CACATTTGAAAATGGATACACTGAAGTATTACCACCATACATGGTAAATAGAGATAGTATGACTGGTACTGGTCAACTTC CAAAATTCGAAGAAGATGCTTTCAAAGTAGAAAACAATGGATATTTCTTAATACCAACAGCTGAGGTTCCTGTAACTAAT ATGTACAGAAATGAAACTTTAGAGGGAGATAAACTTCCAATAAAACATGCTGCATATAGTGCTTGTTTCAGAGCAGAAGC TGGTTCAGCAGGAAGAGATACAAGAGGGCTTATAAGACAACACCAATTTAATAAAGTTGAGTTAGTTAAGTTCTGTAAAC CTGAGCAAAGCTATGAAGAATTAGATAAATTAGTTCAAGATGCTGAATCTGTATTACAAGGTTTAGGATTACCATATAGA ATAGTTAGAATATGTAAAGGTGATTTAGGATTCACTGCTGCATTAAAATATGATATAGAAGTTTGGATGCCAAGCTACAA TAGATATGTTGAAATTTCAAGTTGTTCAAACTTTGAAGATTTCCAAGCTAGAAGAGCTAACATTAAATATAAAAATTCTC CAAAGGAAAAACCACAATTTGTTCATACATTAAATGGATCAGGGGTTGCTATTGGAAGAACTGTAGCTGCTATATTAGAA AACTATCAACAAGAAGATGGATCAGTAGTTATACCAGAAGCTTTAAAAGAATATATGAGATGTGATTTACTAAAATAA Protein sequence : MLDLKKLRSNTEEVKKALSNRGEDFDVNVIDEVIALDEERRKILVDVEALKKQRNEVSAEIPKRKKAGEDVTEVMAEMRE IGGKIKADDAKVAELNDKINYIMLRIPNIPNPAVPEGETDEDNVEIKRWGEPTKFNFEPKAHWDLGTDLDLLDFERGGKV AGSRFTVYKGMGARLERSIINYFLDKHTFENGYTEVLPPYMVNRDSMTGTGQLPKFEEDAFKVENNGYFLIPTAEVPVTN MYRNETLEGDKLPIKHAAYSACFRAEAGSAGRDTRGLIRQHQFNKVELVKFCKPEQSYEELDKLVQDAESVLQGLGLPYR IVRICKGDLGFTAALKYDIEVWMPSYNRYVEISSCSNFEDFQARRANIKYKNSPKEKPQFVHTLNGSGVAIGRTVAAILE NYQQEDGSVVIPEALKEYMRCDLLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-121 | 58 |
