Gene Information

Name : CPF_0118 (CPF_0118)
Accession : YP_694582.1
Strain : Clostridium perfringens ATCC 13124
Genome accession: NC_008261
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 138387 - 139157 bp
Length : 771 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGGGTAAAGAGGTTTTAAAGGTAAGTAATATAGAAAAGTATTATGGTAAAAAAGGAAATGTTACAAAGGCAATTAATGA
TATTAGTTTTACTGTTTCAGAAGGTGAATTTGTTGGAATAATGGGGGCTTCGGGAAGTGGTAAAACAACACTTTTAAATT
GTATATCAACCATAGATAAGGTGACTAGTGGTCATATATATTTAGAGGGAGAGGATGTTACAAGCTTTAGTTCAAAAAAG
TTAGCTAAGTTTAGAAGAGAAAAAATAGGGTTTATATTTCAGGATTTTAATCTTTTAGATACCTTAACAGCTTACGAAAA
TATAGCCTTAGCTCTTACAATTCAAAGAGTGAATAACAAGGAAATAGATAAAAGAGTAAGACTCGTTGCAGAAGCTTTAA
ATATAAGTAATGAGCTTAATAAATATCCTTATGAAATGTCAGGAGGACAAAAGCAAAGGGTGGCATCAGCAAGGGCAATA
GTTACTAATCCATCTTTAGTATTAGCTGATGAACCAACAGGAGCCTTAGATTCAAAGGCAGCTACCATGCTTCTTGAAAG
CTTAGAAGATTTAAATAAGAATTTAAATGCAACAATTATGATGGTAACTCATGATGCTTTTACAGCAAGTTATGCAAATA
GAATTTTATTTATTAAGGATGGAAAGATATTTAATGAACTTATAAAAGGAACTGATTCTAGAAAAGAATTTTTCAATAGA
ATAATTGAAGTCATAACTCTTCTTGGAGGTGACAGTAATAATGTATTTTAA

Protein sequence : 
MGKEVLKVSNIEKYYGKKGNVTKAINDISFTVSEGEFVGIMGASGSGKTTLLNCISTIDKVTSGHIYLEGEDVTSFSSKK
LAKFRREKIGFIFQDFNLLDTLTAYENIALALTIQRVNNKEIDKRVRLVAEALNISNELNKYPYEMSGGQKQRVASARAI
VTNPSLVLADEPTGALDSKAATMLLESLEDLNKNLNATIMMVTHDAFTASYANRILFIKDGKIFNELIKGTDSRKEFFNR
IIEVITLLGGDSNNVF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 8e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_0118 YP_694582.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-42 46
CPF_0118 YP_694582.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 1e-40 42
CPF_0118 YP_694582.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 7e-36 42
CPF_0118 YP_694582.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-34 41