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Name : kdpE (CPF_1214) Accession : YP_695660.1 Strain : Clostridium perfringens ATCC 13124 Genome accession: NC_008261 Putative virulence/resistance : Unknown Product : DNA-binding response regulator KdpE Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 1379302 - 1380015 bp Length : 714 bp Strand : + Note : identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486 DNA sequence : ATGAAACCAGCAATTTTAGTTATTGAAGATGAAAAAGCCATAAGAAATTTTGTAACAGCTACATTAGAAATAAATTCATA CAAGTGTCATACGGCTTTTAATGGTTCACAAGGAATGATTTTAGCAATATCAAAAAGACCAGATATTATAATACTAGATT TGGGACTACCTGATATGGATGGCATAGAAATAATTAAAAAAGTAAGAGAATGGTCAAATTGTCCAATAATTGTAGTTAGT GCAAGAAGTGAAGATAGAGATAAAATTGAAGCTTTAGATTTAGGAGCTGATGATTATTTGACTAAACCATTTAGTGTAGA TGAGTTAATGGCTAGAATAAGAGTTGCTATAAGAAAAATGAACTATGATAGAAATAATACACAGGAAATACAAGAGTTTG TAAATGGAGACTTAAAAATTGATTATACTTCAGGATGTGTATTTTTAAATGAAGAAGAGATACATTTAACTCCAATTGAA TATAAATTACTATGTTTACTTTCTAAAAATGTTGGAAGAGTTCTTACTCACAATTATATATTAAAAGAAATTTGGTCTAG CACTTGTGAAAGTGATATTCCTTCATTACGAGTTTTTATGGCAACTTTAAGAAAAAAATTAAGCAAAAAGGCTATGGATA CAAATTATATACAAACCCATATAGGGGTTGGATATAGGCTACTTAGAATTCAAGATAAGGATAGTGAACTTTAA Protein sequence : MKPAILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEIIKKVREWSNCPIIVVS ARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYDRNNTQEIQEFVNGDLKIDYTSGCVFLNEEEIHLTPIE YKLLCLLSKNVGRVLTHNYILKEIWSSTCESDIPSLRVFMATLRKKLSKKAMDTNYIQTHIGVGYRLLRIQDKDSEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SH0031 | YP_251946.1 | hypothetical protein | Not tested | SCCmec | Protein | 5e-45 | 44 |
| kdpE | BAA82188.1 | KDP operon transcriptional regulatory protein KdpE | Not tested | Type-II SCCmec | Protein | 7e-44 | 43 |
| kdpE | YP_039536.1 | response regulator protein | Not tested | Type-II SCCmec | Protein | 1e-43 | 43 |
| kdpE | NP_370594.1 | transcriptional regulator kdpE | Not tested | Type-II SCCmec | Protein | 1e-43 | 43 |
| kdpE | NP_373306.1 | hypothetical protein | Not tested | Type-II SCCmec | Protein | 1e-43 | 43 |
| kdeP | YP_190033.1 | DNA-binding response regulator KdeP | Not tested | Type-II SCCmec | Protein | 1e-43 | 43 |
| EF0571 | NP_814337.1 | DNA-binding response regulator | Not tested | Not named | Protein | 6e-43 | 41 |
| ef0091 | AAM75294.1 | EF0091 | Not tested | Not named | Protein | 4e-43 | 41 |
