Gene Information

Name : CPF_1056 (CPF_1056)
Accession : YP_695502.1
Strain : Clostridium perfringens ATCC 13124
Genome accession: NC_008261
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1204584 - 1205264 bp
Length : 681 bp
Strand : +
Note : identified by similarity to GB:BAB95170.1; match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGGTTAAGATTTTGATTGTTGAAGATGAAGAAAAAATAGCAAGATTCATAGAATTAGAGTTAATTCATGAAGGATATAA
AGTAATAAAAGCAGATAATGGGAGAACAGGTCTTGAAATTGCAGAGAGAGGAGAAGTTGACTTAATTATTCTAGATGTTA
TGCTTCCAGAAATTAATGGTCTTGAAGTATTAAGAAGAATCAGAAAGGTATCAGAAGTTCCTATTATAATGCTTACAGCA
AGAGATGCTGTAATGGATAAGGTTTCAGGTCTAGATGCTGGAGCTGATGATTATATAACAAAGCCTTTTGCTATAGAGGA
ATTGCTTGCAAGAATAAGAACAGCTCTTAAAAAGAGAGTATTTACAGTGAAAAAAGATGAAGATGTAATAAGATGTGGAT
TATTAACCTTAGACAAGATGAGACATAAAGTAATGTATGGTGATACAGAAATAGAATTAACTAATAGAGAATTTACTTTG
TTGCAAATATTAATGGAAAACAAAAATATAGTATTAACTAGAGATGTACTTATAGAAAAGGTATGTGGTTATAACTATGT
TGGAGAAACAAATGTAATAGATGTTTACGTAAGATATTTAAGAACAAAGATTGACGATGTTTTTAAGGTTAAAATAATAA
GTACAGTACGTGGTGTAGGATACGTAATAAAAGATGAGTAA

Protein sequence : 
MVKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGLEVLRRIRKVSEVPIIMLTA
RDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTL
LQILMENKNIVLTRDVLIEKVCGYNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVIKDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-38 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_1056 YP_695502.1 DNA-binding response regulator HE999704.1.gene1528. Protein 3e-46 56
CPF_1056 YP_695502.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 1e-46 54
CPF_1056 YP_695502.1 DNA-binding response regulator AE015929.1.gene1106. Protein 2e-43 53
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0125 Protein 7e-43 46
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0308 Protein 3e-42 45
CPF_1056 YP_695502.1 DNA-binding response regulator NC_012469.1.7685629. Protein 9e-39 45
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0197 Protein 1e-40 44
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0111 Protein 1e-37 43
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0638 Protein 3e-35 42
CPF_1056 YP_695502.1 DNA-binding response regulator BAC0083 Protein 9e-40 41
CPF_1056 YP_695502.1 DNA-binding response regulator DQ212986.1.gene4.p01 Protein 3e-28 41
CPF_1056 YP_695502.1 DNA-binding response regulator NC_005054.2598277.p0 Protein 1e-35 41
CPF_1056 YP_695502.1 DNA-binding response regulator EU250284.1.orf4.gene Protein 4e-31 41
CPF_1056 YP_695502.1 DNA-binding response regulator NC_014475.1.orf0.gen Protein 1e-35 41
CPF_1056 YP_695502.1 DNA-binding response regulator AF155139.2.orf0.gene Protein 2e-33 41
CPF_1056 YP_695502.1 DNA-binding response regulator HE999704.1.gene2815. Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPF_1056 YP_695502.1 DNA-binding response regulator VFG0596 Protein 3e-38 42
CPF_1056 YP_695502.1 DNA-binding response regulator VFG1390 Protein 3e-39 42