|
Name : wbpO (ABO_0908) Accession : YP_692628.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : 1.1.1.132 Position : 1015447 - 1016721 bp Length : 1275 bp Strand : + Note : (capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase) identified by match to PFAM protein family HMMPF00984 InterPro: UDP-glucose/GDP-mannose dehydrogenase family The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes w DNA sequence : ATGGAATTGGGTGATATTAAGTTAGCCGTTATCGGTTTGGGCTACGTGGGTTTGCCGTTGGCTGTGGAATTTGGTAAACG TCGTTCAGTCATTGGTTTTGACATCAACAAGCCACGCATTGATGCGTTGAACGATGGCCATGATGCTACGCTGGAAGTGG ATGATGAAGAGCTTGCATCGGCTAACCAATTAACCTTTAGTGCTGATCCAGCCAGCCTGCGTGACTGCAACGTTTACATC GTTACTGTGCCTACGCCGATTGATGAGCATAAACGGCCTGACCTAACGCCATTGGTAAAGGCGTCAGAAACCATCGGCAA GACGCTCAAAAAAGGCGATATTGTCATCTACGAATCCACCGTCTATCCGGGTGCCACAGAAGAAGATTGCGTGCCTGTGT TGGAGAAGGTTTCCGGGCTGGTCTTCAACAAGGACTTCTTCGCCGGTTATAGCCCAGAGCGTATCAACCCAGGTGATAAA GAGCATCGTGTTACTACGATCACCAAAGTCACATCCGGCTCTACCCCGGAAGTGGCGGAACTGGTGGACCAAATTTACGC CTCCATTATCACCGCCGGCACCCACAAGGCGTCCAGTATCAAGGTGGCCGAAGCCGCAAAGGTTATCGAAAATACTCAGC GTGATCTGAATATCGCCTTGGTTAACGAACTCTCGATGATTTTTAATCGAATGGGAGTAGACACCGAGGAAGTGCTGCAG GCCGCAGGCACCAAATGGAATTTTTTACCCTTCCGGCCAGGCTTGGTGGGCGGGCATTGTATCGGTGTAGACCCTTATTA CCTCACGCATAAAGCCCAATCGATAGGCTACCACCCGGAAGTCATACTTGCTGGGCGTCGAATTAACGATGCCATGGGCC GCCATGTGGCAAGCGAGCTGGTTAAGGCTATGCTCACCCGTAGCATTCAGGTTAACGGTTCCCGAGTCCTGGTTATGGGG CTTACCTTCAAGGAAAACTGCCCGGACCTGCGTAACACGCGTGTGGTCGACGTGGTGAAAGAGCTGCAGGACTACAACAT CCAGGTAGACGTTCATGATCCCTGGATTAACGCTGCAGAGTCCCAACACGAATACGGCATCACGCCAGTAGCAACGCCAG AGATGGAGGCCTACGACGCCATCCTTCTAGCCGTGGGCCACAACCAGTTCAAAGCCATGGGCTCCCAGGCTATCAGAGGC TTCGGCAAACCCGAGCATATCCTGTATGACCTGAAATACAGCCTCCCCAAGGAAGAGGTGGACCTAAGGTTGTGA Protein sequence : MELGDIKLAVIGLGYVGLPLAVEFGKRRSVIGFDINKPRIDALNDGHDATLEVDDEELASANQLTFSADPASLRDCNVYI VTVPTPIDEHKRPDLTPLVKASETIGKTLKKGDIVIYESTVYPGATEEDCVPVLEKVSGLVFNKDFFAGYSPERINPGDK EHRVTTITKVTSGSTPEVAELVDQIYASIITAGTHKASSIKVAEAAKVIENTQRDLNIALVNELSMIFNRMGVDTEEVLQ AAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSIGYHPEVILAGRRINDAMGRHVASELVKAMLTRSIQVNGSRVLVMG LTFKENCPDLRNTRVVDVVKELQDYNIQVDVHDPWINAAESQHEYGITPVATPEMEAYDAILLAVGHNQFKAMGSQAIRG FGKPEHILYDLKYSLPKEEVDLRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 8e-149 | 67 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 8e-149 | 67 |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 8e-117 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| wbpO | YP_692628.1 | capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati | VFG0431 | Protein | 4e-149 | 67 |
