Gene Information

Name : xerD (ABO_0803)
Accession : YP_692523.1
Strain : Alcanivorax borkumensis SK2
Genome accession: NC_008260
Putative virulence/resistance : Unknown
Product : integrase/recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 895247 - 896185 bp
Length : 939 bp
Strand : +
Note : identified by sequence similarity; Homologous to Abo_2171; InterPro: Phage integrase; High confidence in function and specificity

DNA sequence : 
ATGGTAACGGCAATCGATGGACAGCTCACCGAGGACCACCGCCGGCTGATTGATAGCTGGCTGGATCAGCAGTGGCTGGA
AAAAGGACTGAGTGAGCATAGTTTGTCTAATTATCGTCGCGACCTCAGCCAGTTGGCTTGCTGGTTGCAAGGGCAGCGGG
TAGCCCTGCTCGGTTGCGAGCGTTATCAACTGCTGGAGTTTTTGGCCTACCGGCACCAGCAGGGCCTCAGTGCCCGCTCA
GTGGCTCGTCAGTTGTCTGCGGTGAAAAGCTTTTACCGTTGGCTTAAGCGCGAAGGGCGTATTAGTGAAGATCCTGCCCT
GCTGATTGAGCGTCCCAAACTGGGGCGGCCGTTACCGAAAACGCTGAGCGAAGCGGATGTGGAGGCGCTGTTGGCGGCGC
CGGACCTGTCCACCCCCTTAGGGTTGCGCGACCGGGCCATGCTGGAGGTGTTGTACGCCACCGGCTTACGGGTCACTGAA
TTGGTGACGTTGACGCAAAGTCAGGTAAACCCCCGCCAAGGCGTGATTCGTGTGATAGGCAAGGGCGACAAGGAACGCTT
GGTGCCGTTGGGCGAAGAGGCACTGCACTGGCTGGAGCGTTATCTGCGTGAAGGACGGGCGTTGCTGATGGGGGGGGCTG
CAACGCCTGGCAACCAGGAGCTACTGTTTCCCAGCCGCCGTGGCACCTGCATGACCCGACAGACATTCTGGCATCGAATC
AAGCAGCTAGCAGTGGTCGCAGGGGTGCAAAAAAAGCTCTCTCCCCATACACTGCGGCATGCTTTTGCCACTCACTTGTT
GAATCACGGTGCAGATTTGCGGGTGGTGCAATTGTTGTTGGGCCATTCGGATCTCTCGACCACGCAAATTTATACCCATG
TGGCGCAGCAGCGGTTACAAGACGTATACCAGAAACATCACCCTCGATCGGGAACTTGA

Protein sequence : 
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQGLSARS
VARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTE
LVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPRSGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 1e-61 59
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 1e-61 59