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Name : pilB (ABO_0614) Accession : YP_692334.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : type IV fimbrial assembly protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 674017 - 675723 bp Length : 1707 bp Strand : - Note : identified by sequence similarity and match to PFAM protein family HMMPF00437 InterPro: Bacterial type II secretion system protein E; Family membership DNA sequence : ATGACTAGCCAAACCACCTCATTTAGCGGCTTACCGCATCGATTAATACAGCAGGGCCTGCTAGACGCAGAGAGCATACA GCTAGCCCTGCAACAGGCTCGCCAAGAAAAAACCAGCCTTATTAAACAGATCGTTGCTAGTGGGAAACTTACGGCTAGGC AGGTAGCAAGCGCCGTTGCGGAAGAATTTGGCGACCCTATTTTTGACCTTAACAGCTTCCAGCGCGATAGCTTAGTAAAG GACCTTGTCGACCCTAAGCTGATCAATAAACACAACGTACTCCCCCTTTACCGGCGCGGAAGCCGCCTCTTTGTTGCGGT ATCCGATCCTACTAATTTACCTGCGCTAGAAGAAATCCGTTTTAATACTGGCCTTAATGTAGAAACGGTGATTGTTGAGG AAGACAAGCTAAGCCAATGGATCGAAGCGTTGGAGTCCGAGACCGAAGATGATGCCTTTAGCGACCTGGATGCCGGACTA GAAAACCTGGACATTAGTTCGAATGAAGAAACAGAAGATGAAACTCAATCTGGTGCCGATGATGCACCAATTGTCCGCTT CGTGAATAAACTTCTTCTTGATGCCATTAAGGGCGGAGCATCAGATTTGCATTTCGAGCCCTATGAGAAAACCTATCGGG TGCGCTTCCGTCAAGATGGCATCCTGCAAACCGTATCGAAACCACCTATCAATATCGCCAGCAAACTTGCTGCGCGCCTA AAGGTCATGTCTCGGCTGGATATTTCAGAACGTCGAGTCCCTCAGGATGGCCGGATAAAGTTGAAAATTTCCAAGACACG GGCCATCGATTTCCGGGTGAACACCTGCCCCACCTTATTTGGTGAAAAAATTGTATTGCGTATTCTGGACCCGGAATCCG CAAAAATGGGCATCGAGGCTTTGGGTTATGAAAATGATCAGAAACAGATGTACCTGGATGCCCTGCATAAACCACAAGGC ATGATACTAGTCACTGGCCCCACCGGCTCAGGCAAGACCGTTTCACTATACACCGGAGTAAACATTCTCAATACGCCAGA ACTCAATATTTCCACCGCCGAAGACCCGGTTGAAATCAACTTGGAGGGGGTTAACCAGGTTAATGTGAACCCGAAACAAG GGATGAATTTCTCATCAGCACTACGTGCCTTCCTACGCCAGGATCCCGACGTCATTCTGGTGGGAGAAATTCGTGACTTA GAAACAGCAGAAATAGCTGTGAAAGCGGCCCAGACAGGTCACCTGGTACTTTCCACCCTCCACACTAACAGCGCACCGGA AACTCTAACTCGTCTTCGCAACATGGGCGTTCCCTCCTTCAACATTGCCACCTCGGTATTATTAATTATTGCCCAACGTT TAGCCCGGCGCCTGTGTGAAAACTGCAAAACTCCAGTGGATATTCCTAAACAATCCTTGCTTGAGATGGGTTTCACGGAA GACGATATCGCCAACGAGTTTACTGTGTACGGACCGGTAGGGTGCGACAAATGCAAGAACGGCTACAAAGGGCGAGTGGG GATTTATGAAGTCGTTAAAATCACAGACGGCATCGCGCGCATTATTATGGAAGAGGGTAACTCTATCGAAATTGCCGACC AGTGCCGCAAGGAGGGCTTTAATAACCTTCACCGCTCCGGATTGGTAAAAGCAATGCAAGGGGTTACCAGCCTAGAAGAA ATTAACCGTGTCACAAGCGGACATTGA Protein sequence : MTSQTTSFSGLPHRLIQQGLLDAESIQLALQQARQEKTSLIKQIVASGKLTARQVASAVAEEFGDPIFDLNSFQRDSLVK DLVDPKLINKHNVLPLYRRGSRLFVAVSDPTNLPALEEIRFNTGLNVETVIVEEDKLSQWIEALESETEDDAFSDLDAGL ENLDISSNEETEDETQSGADDAPIVRFVNKLLLDAIKGGASDLHFEPYEKTYRVRFRQDGILQTVSKPPINIASKLAARL KVMSRLDISERRVPQDGRIKLKISKTRAIDFRVNTCPTLFGEKIVLRILDPESAKMGIEALGYENDQKQMYLDALHKPQG MILVTGPTGSGKTVSLYTGVNILNTPELNISTAEDPVEINLEGVNQVNVNPKQGMNFSSALRAFLRQDPDVILVGEIRDL ETAEIAVKAAQTGHLVLSTLHTNSAPETLTRLRNMGVPSFNIATSVLLIIAQRLARRLCENCKTPVDIPKQSLLEMGFTE DDIANEFTVYGPVGCDKCKNGYKGRVGIYEVVKITDGIARIIMEEGNSIEIADQCRKEGFNNLHRSGLVKAMQGVTSLEE INRVTSGH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-80 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-80 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG0112 | Protein | 2e-176 | 65 |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG1880 | Protein | 4e-153 | 55 |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG0233 | Protein | 5e-127 | 49 |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG1876 | Protein | 3e-75 | 46 |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG0182 | Protein | 3e-79 | 46 |
| pilB | YP_692334.1 | type IV fimbrial assembly protein PilB | VFG2048 | Protein | 5e-80 | 42 |
