Gene Information

Name : ABO_0471 (ABO_0471)
Accession : YP_692191.1
Strain : Alcanivorax borkumensis SK2
Genome accession: NC_008260
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 511420 - 512814 bp
Length : 1395 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTGCAGAAGCCCCCCACGTATTGGTTGTTGACGATGAAGCTGACCTGCGCGAACTGCTGGTCATCACGCTCGGCCG
CATGAAACTTCAGGCCACCGCCGCCGACTCTCTGTCCACTGCCAAACAGCGCCTTAAAGAGGCACACTACGATCTCTGCC
TGACAGATATGAACCTGGGGGATGGTACCGGCCTAGAGCTTCTCCAATTCATTTCACAATATTGTCCGACTATGCCCACT
GCCGTAATAACCGCCTACGGCAGCATGAAAACCGCCACCGATGCGATGAAATATGGCGCCTATGATTTTATTGCCAAGCC
TGTCGCTCTTGACCGATTAAGGCAGTTAATTGAAGACGGGCTGGGCATCAACGAAGTCGAAGAACACCATGAAGAAGAAG
ATAATCTGATTGGTGACGCGCCCAGCATGGTCGCGCTAAAAAGCCAGGTTCGAAAGTTGGCGCGCAGCCAAGCGCCTATT
TATATAAGTGGCGAATCAGGAAGCGGTAAAGAGCGTATCGCACGATTAATTCACACGTTAGGACCGCGCCGGGAAAAACC
GTTTGTGGCAGTAAACTGCGGCGCCATACCGTCTGAACTAATGGAAAGTGAATTTTTTGGCCATCGCAAAGGCGCATTTA
CCGGCGCGGTGGAAGACCGAAAGGGACTGTTCCGCGAAGCTGATGGCGGCACCTTATTTCTCGATGAAGTGGCCGACCTT
CCCTTACATATGCAGGTCAAACTGCTACGAGCCATTCAGGAAAAATCCGTTCGACCGGTAGGCGAAGCCAAGGAATTCCA
AGTCAATCTACGGATTCTCTGCGCCACCCACAAGAACCTGGAAGACGAAATGGAAGAGGGGCGTTTTCGTCAGGATCTTT
TCTATCGGCTTAATGTTATCGAGGCTCACGTTCCGCCGTTACGCGAGCGACGTGAAGATATTCCAAAGCTGGTTCGGCAT
ATTCTCGACCGGCTCAGCCAAGCCTGGGAAATTCCGCCGCCCAGCGTTAGCTCTGACGCGGTGAATGCCATTGGCAACTA
CGCGTTTCCCGGCAATGTCAGGGAGTTGGAAAACACCCTGGAGCGGGCGCTAACATTGTGTGACGGCAACACTATTCTCC
CCGAACACCTGCGCCTACCATCAAACCGTTCTGGGCTGGCCTCAAACCGTTCTAGCACTTCAACCTCGCCCCCCCCCATA
AGACCCAGCGAACAGTCCCTGGAAGAGTTTCTTCAGGAAATCGAAAAACAGGAAATACTCAAGGCTCTGGATACAACTCA
CTGGAATCGTACCGCCGCCGCAAAAAAACTCGGCATGACCTTCCGCTCTTTGCGCTACCGATTGAAAAAGCTGGAGCTGG
ACCGTGATGACGACGAAACAGACGATAACGAATAA

Protein sequence : 
MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLGDGTGLELLQFISQYCPTMPT
AVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDGLGINEVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPI
YISGESGSGKERIARLIHTLGPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL
PLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFYRLNVIEAHVPPLRERREDIPKLVRH
ILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRELENTLERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPI
RPSEQSLEEFLQEIEKQEILKALDTTHWNRTAAAKKLGMTFRSLRYRLKKLELDRDDDETDDNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-103 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-103 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABO_0471 YP_692191.1 Fis family transcriptional regulator BAC0089 Protein 5e-72 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABO_0471 YP_692191.1 Fis family transcriptional regulator VFG1214 Protein 3e-127 59
ABO_0471 YP_692191.1 Fis family transcriptional regulator VFG0116 Protein 2e-58 41