Gene Information

Name : dnaB (ABO_2187)
Accession : YP_693907.1
Strain : Alcanivorax borkumensis SK2
Genome accession: NC_008260
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 2497161 - 2498555 bp
Length : 1395 bp
Strand : -
Note : (groP), (grpA) identified by match to TIGR protein family HMMTIGR00665; High confidence in function and specificity

DNA sequence :
ATGAATGAACCCATGTCGCTGGACAAACATCTGCCTGAAAACCTGCGTATTCCCCCCAACTCTGTGGAGGCGGAGCAGGC
GGTGCTGGGTGGTTTGCTGCTCAATAACAGCGCCTGGGATGATGTGGCCGAGCGCGTTGGCGCGAGGGACTTTTACCGTA
AGGAGCATCGCCAGATTTTCGAGGTGATTGCCCAGCTGGTGGAAGAAGAAAACCCCAGTGACCTGGTTACCGTCTCCCAG
GCGCTGAATAACCTGGGCCAGTTGGAATCCATCGGCGGCATGACCTACCTGTCTGAGTTGGCCCGCAACACTCCCAGTGC
GGCCAACATTACTGCCTATTCGGATATTGTCCGTGAGCGCAGCATCCTGCGGCAGTTGATCAATGTGTCCCACAAGGTGG
CAGACAGCGCGTTTAATACAGAGGGCCGCAAGTCATTGGAAATTCTTGATGAAGCGGAATCCGCCATCTTCAAGATTGCT
GAGCAGCAGAAAAAAGGCGATGGCCCGCAGAACATCAAATCAGTGCTTAAAAAAGCAGTGGACCGGATTGATGAGCTGTA
CAAAACGAAGAGTTCACTTACCGGCCTGACGTCTGGTTTTGAAGAGTTGGATAAAATGACCGGGGGCCTGCAGCCGGCGG
ACATGATCGTGGTTGCGGGCCGGCCTTCCATGGGTAAGACCACCTTTGCCATGAACCTGTGTGAAAACGTGGCGATCAAG
AGTAACAAGCCCGTGCTGGTGTTCTCCATGGAAATGCCGGCGGAGTCCATCGTAATGCGGATGTTGTCCTCGCTGGGCCG
CATCAATCAGGGGGCAATTCGTTCCGGTAATCTGGAAAAGGATGATTGGCCGCGCATTACTTCTGCCATTCACATGCTCA
GTGAGCAACGCTTTTTTATTGATGATACCCCGGCACTGAGCCCGCTGGAGATGCGTGCCCGTGCTCGTCGGGTAGCGCGC
GAATGTGGCGGTGAGCTGGGCCTGATCATGGTCGATTACCTGCAGCTGATGCAGGTGCCTGGGGTGGAAAACCGGGTGAA
CGAAATCTCGGAAATTTCCCGCTCCCTAAAAGGGATCGCTAAGGAGCTGAATTGTCCGGTGCTGGCGCTCTCCCAGTTGA
ACCGCTCGCTGGAACAACGCCCCAACAAACGCCCTGTGATGTCGGATCTACGTGAATCCGGGGCGATTGAGCAGGATGCG
GATTTGATCGTCTTCCTGTACCGGGACGAGGTGTATAACAAGGACAGCAATGAGCGCGGTGTCGCCGAGATTATTATCGG
CAAACAGCGTAATGGTCCTATCGGTACCGTACGCCTAGCCTTCCGCGGTGAGTTCACCCGCTTCGATGATCTGGCCCCGG
AATATTATGCGCAGTTGGCCGCAGGGGATGAATAA

Protein sequence :
MNEPMSLDKHLPENLRIPPNSVEAEQAVLGGLLLNNSAWDDVAERVGARDFYRKEHRQIFEVIAQLVEEENPSDLVTVSQ
ALNNLGQLESIGGMTYLSELARNTPSAANITAYSDIVRERSILRQLINVSHKVADSAFNTEGRKSLEILDEAESAIFKIA
EQQKKGDGPQNIKSVLKKAVDRIDELYKTKSSLTGLTSGFEELDKMTGGLQPADMIVVAGRPSMGKTTFAMNLCENVAIK
SNKPVLVFSMEMPAESIVMRMLSSLGRINQGAIRSGNLEKDDWPRITSAIHMLSEQRFFIDDTPALSPLEMRARARRVAR
ECGGELGLIMVDYLQLMQVPGVENRVNEISEISRSLKGIAKELNCPVLALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA
DLIVFLYRDEVYNKDSNERGVAEIIIGKQRNGPIGTVRLAFRGEFTRFDDLAPEYYAQLAAGDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-105 53
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-95 49
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-94 49
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 9e-90 48
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 3e-89 48
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-89 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-86 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-86 46
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 6e-72 43