Gene Information

Name : tnpB (ABO_2081)
Accession : YP_693801.1
Strain : Alcanivorax borkumensis SK2
Genome accession: NC_008260
Putative virulence/resistance : Unknown
Product : transposase subunit B
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2368353 - 2369225 bp
Length : 873 bp
Strand : -
Note : (transposase subunit B, ) identified by sequencesimilarity; InterPro: Integrase catalytic core; High confidence in function and specificity

DNA sequence : 
TTGAGGTACGCCTTCATTCAGGAGCACAGCGAGCGGTGGGCAATTCGCTCACTGTGTTCCCTGTTGGACGTTCACCCCAG
TGGCTTTTATGCCTGGCAGAAACAGCCTCGTTCAGCTCGAGCAATCGAGGACGAGCGCCTGTCCGGGCTGATAAAGCAAT
TCTGGTTGGAATCTGGAGCCGTGTATGGCTACAGGAAGATCCACACGGATCTACGCGAGTATGGCGAGCGCTGCGGGCCC
AATCGAGTCCATCGCCTGATGCGCCACGCGGGAATACGAGCGCAGGTTGGTTACCGTAAGCCACGCCATAGGGCCGGGGA
GCTACACAAAGTGACACCGAATATCCTGCAGCGGCAGTTCAATCCGCAAGCGCCGAACGAGAGCTGGGTAACGGATATTA
CCTATATCCGCACACATGAAGGCTGGTTGTATCTGGCGGTTGTTCTGGATCTGTTCTCAAGACGGGTGATCGGTTGGTCA
ATGCAATCCCGGATAACCAAGGAGCTGGCGCTGGATGCGCTGCTGATGGCGGTCTGGCGCCGCAAGCCTGAAGGCAAGGT
GGTTGTTCACTCCGACCAAGGCAGTCAATACACCAGCCACGACTGGGATTCGTTTCTGAGGGCGCATGACCTGGAGGGGA
GTATGAGTCGGCGCGGTAACTGCCACGACAATGCTGTTGCTGAGAGCTTCTTCCAGCTGTTGAAGCGGGAAAGAATAAAG
CGAAAGATTTACAGCAGCCGTGACGCCGCTCGGGCAGATATTTTTGATTATATCGAGATGTTCTATAACAACCGGCGGCG
CCATGGTTCTAATGAAAAGCTGTCACCGGTAGAGTATGAAAAGCGTCACCAAGAACGGCTGGGAAGTGTCTAG

Protein sequence : 
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGAVYGYRKIHTDLREYGERCGP
NRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQFNPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWS
MQSRITKELALDALLMAVWRRKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-43 46
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-43 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-47 43
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-47 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 2e-47 43
unnamed AAC31485.1 L0006 Not tested LEE Protein 5e-30 43
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 6e-30 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 5e-30 43
unnamed CAI43898.1 putative transposase Not tested LEE Protein 8e-31 43
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 8e-31 43
Z5089 NP_290241.1 transposase Not tested LEE Protein 7e-30 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 3e-50 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-44 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-44 42
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 6e-35 41
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 6e-35 41
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 6e-35 41
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 6e-35 41
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 8e-35 41
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 6e-35 41
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 8e-35 41
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 6e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpB YP_693801.1 transposase subunit B VFG0785 Protein 3e-30 43
tnpB YP_693801.1 transposase subunit B VFG1631 Protein 2e-50 42
tnpB YP_693801.1 transposase subunit B VFG1122 Protein 3e-35 41