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Name : lysS (ABO_1648) Accession : YP_693368.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1882927 - 1884441 bp Length : 1515 bp Strand : - Note : identified by sequencesimilarity; InterPro: Lysyl-tRNA synthetase class-2; High confidence in function and specificity DNA sequence : ATGAGCCAAGACAACACCACACAGAATGTCGATGCCTCGCAGCAGGCCGCTGCTGAAAACCGTCTGATTGCAGAACGTCG TGCCAAGTTGGCCGAGTTACGCGAAGGCGGTAACCCGTTTCCCAATCATTTTCGTAGGGATTCCCTTGCCGCCGATTTGC AGGCGCAGTATGGCGAATTCACCAAGGAAGAGCTGGAAGAGAAAAATATTCAGGTGGCGGTAGCCGGCCGTATGATGCTG GATCGCAAAGCCTTTAAGGTGCTACAGGACATGTCTGGGCGCATTCAGATTTTCGCGCCCAAGGACGAAACCCGCGATGT GCGTAAAGAAACCAAGAGCTGGGATCTGGGCGACATCATTGGGGTGCGTGGCACGCTGTGCAAATCCGGTAAGGGCGACC TGTATGTGATGATGGATGAGTATTTTTTGCTCACCAAATCCCTGCGCCCGCTGCCCGAAAAGCATAAGGGGCTCACTGAT ACCGAAGCCAGGTACCGCCAGCGTTATGTGGACTTGATCGTTAACGAGGACACTCGAAAGACGTTCCAGATCCGCGCCAA AATTGTGGCCGGGATTCGCAACTTTCTGGTACAAAAAGATTTCGTGGAAGCGGAAACACCCATGCTGCAGGTGATTCCAG GCGGCGCGACTGCACGTCCGTTTATTACTCACCACAATAGCTTAGACATGGACATGTACTTGCGCATTGCGCCGGAACTG TACTTGAAGCGGTTGGTGGTCGGCGGTTTCGAAAAAGTGTTCGAGATTAACCGTAACTTCCGCAATGAAGGGCTCTCGAC CCGGCATAACCCGGAATTCACCATGCTGGAATTTTACCAAGCGTTTGGTGATTACCACGACCTGATGAACCTGACCGAAG AAATGCTGCGCACCTTGGCCGAGACGGTGTTGGGCAGCACGGATGTGGCTTACCAGGGCGATGTGTTTGATTTTGGCAAA CCTTTTACCCGCATGACGGTGTTCGATTCCATTTTGCATTTTAATCCTGATATTGATGCCGCCAAATTGGCAGATATTGA GGGCGCTCGAGAGATCGCCACCGGCTTGGGGATTCCGCTTAAAGACGGTTACGGCTTGGGTAAGGTGCAGATCGAGATTT TTGAGAAGACGGTGGAACACCGCCTGAAAGATCCCACCTTTATTACCGAGTATCCCACCGAGGTTTCGCCGCTGGCGCGT CGCATGGACGATAACCCCTTTGTGACAGAGCGGTTTGAATTTTTTGTGGGTGGTCGTGAAATTGCCAACGGCTTCTCCGA GTTGAATGATGCGGAAGACCAAGCCGAGCGTTTCCGTCAGCAGGTGGAAGAAAAAGCCGCAGGTGACGACGAAGCCATGT TCTACGATGAAGATTATGTGGTCGCGCTTGAGCATGGCCTGCCACCGACCGCTGGTGAGGGCATCGGCATCGATCGTCTG GTAATGTTGTTTACCGATGCACCGTCCATTCGTGACGTTATTCTGTTTCCGCATATGCGGCCCCAGGGCCGGTAA Protein sequence : MSQDNTTQNVDASQQAAAENRLIAERRAKLAELREGGNPFPNHFRRDSLAADLQAQYGEFTKEELEEKNIQVAVAGRMML DRKAFKVLQDMSGRIQIFAPKDETRDVRKETKSWDLGDIIGVRGTLCKSGKGDLYVMMDEYFLLTKSLRPLPEKHKGLTD TEARYRQRYVDLIVNEDTRKTFQIRAKIVAGIRNFLVQKDFVEAETPMLQVIPGGATARPFITHHNSLDMDMYLRIAPEL YLKRLVVGGFEKVFEINRNFRNEGLSTRHNPEFTMLEFYQAFGDYHDLMNLTEEMLRTLAETVLGSTDVAYQGDVFDFGK PFTRMTVFDSILHFNPDIDAAKLADIEGAREIATGLGIPLKDGYGLGKVQIEIFEKTVEHRLKDPTFITEYPTEVSPLAR RMDDNPFVTERFEFFVGGREIANGFSELNDAEDQAERFRQQVEEKAAGDDEAMFYDEDYVVALEHGLPPTAGEGIGIDRL VMLFTDAPSIRDVILFPHMRPQGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-138 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_693368.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-138 | 58 |
