|
Name : gspF (ABO_1313) Accession : YP_693033.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 1490778 - 1491995 bp Length : 1218 bp Strand : + Note : Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership DNA sequence : ATGCCAGCATTTGAATACCGCTCTCTGGATCACAGGGGCAAGATCAACAAAGGCACGCTGGAAGCAGACAGTGCCCGCCA GGTGCGCCAGCAATTGCGCGACAAGGGCTGGGTGCCGCTGGAGGTCAATGAAGCCAACGACTCCAGCAGCCAGGGCATGG GCCGGTTTGCCGGGTCCGGCAAAATCAATGGTGCTGAGCAGGCGCTGATAACGCGTCAACTGGCCACCCTGCTGAAATCC GGCCTGCCGGTAGAACAGGCCTTATCTGCGGTCTCCAAGCAGGCCGCCAACGACCGTATCGAACGGATTATGCTGGCGGT GCGCGCCAAAGTGCGTGAAGGTTATAGCCTAGCGCACAGTTTCGAATCATTTCCCCGTGCTTTCCCGGAAATGTACCGCG CCACGGTAGCGGCCGGTGAGCAGAGCGGGCATTTGGAACAAGTGCTGGAGCAACTGGCGGATTACCTGGAAACCCGCCAC GACACTGGGCGTTCCGTAGCCCAGGCGATGATTTATCCTGCGTTTATCATGGTGTTTGCCTCCATCGTCATTATGCTGAT GATGACCTTCGTGGTCCCAAAGCTGGTGGCAGTGTTTGAGGGACGAGATCAAGCATTACCGTTACTCACCCGTATTGTCA TGGCCATGAGCGACTTTGCTCGGGGCTGGGGCTGGTTGGTTGTGTTATTGATCGTTGTGGCCGTGGTGGTATTTATGCGG GCCATGCGTGATCAGCGCTTTCGATTACGGGTGCACCAGCGTTTGGTGAATATGCCTCTGGTAGGTACTATGCTGCGGGC GGGTGACAGTGCCCGGCTGGCCAGCACGCTGGGTATCCTCGGTCGCTCCGGTGTGCCGTTGGTGGATGCCCTGTTTATCG CCGCGCAGGTGGTGGGCAATCTGGCGGTCCGCAATGCGGTAAAAAACGCGGCCGCTAAGGTCCGCGAAGGCGGCAGCCTC AGCCGAGCCCTGGATGCCAGTGGTTATTTTCCTCCCATGCTGGTGCAGATGATTGCCAGTGGCGAGGCCAGCGGCGAACT GGACAACATGCTGACCCGGGCTGCGGATTATCAGGAACGAGAACTCAGCAGTACGATCGGGACCATGGTAGGGCTGCTCG GTCCAATCATGTTGTTGGTCATGGCCGGAGTGGTGGTCATGATCGTCCTCTCGGTCATGCTGCCGATCATGCAAATGAAT AACTTACTAGCCGGTTAA Protein sequence : MPAFEYRSLDHRGKINKGTLEADSARQVRQQLRDKGWVPLEVNEANDSSSQGMGRFAGSGKINGAEQALITRQLATLLKS GLPVEQALSAVSKQAANDRIERIMLAVRAKVREGYSLAHSFESFPRAFPEMYRATVAAGEQSGHLEQVLEQLADYLETRH DTGRSVAQAMIYPAFIMVFASIVIMLMMTFVVPKLVAVFEGRDQALPLLTRIVMAMSDFARGWGWLVVLLIVVAVVVFMR AMRDQRFRLRVHQRLVNMPLVGTMLRAGDSARLASTLGILGRSGVPLVDALFIAAQVVGNLAVRNAVKNAAAKVREGGSL SRALDASGYFPPMLVQMIASGEASGELDNMLTRAADYQERELSSTIGTMVGLLGPIMLLVMAGVVVMIVLSVMLPIMQMN NLLAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 1e-58 | 41 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-58 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_693033.1 | general secretion pathway protein F | VFG0181 | Protein | 3e-89 | 52 |
