|
Name : serS (ABO_1294) Accession : YP_693014.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1469117 - 1470406 bp Length : 1290 bp Strand : + Note : identified by match to TIGR protein family HMMTIGR00414 InterPro: Seryl-tRNA synthetase; High confidence in function and specificity DNA sequence : ATGCTGGATATTCGTGCCTTGCGGCAGGACGGTGAAGCGATCAAGGCGGCGTTGAGCAAACGCGGCTACACCCTGGACCT GGAGGAATTTGCCGCTTTGGATGCCAAGCGCAAGCAAGCAGATATGCGCTCCCAGGAATTACAGGCGGATCGCAAGAAAG CTTCCAAGCAGGTGGGCGAGTTGATTAAGTCCGGTATGGCGGTGGATGAGGCTAAGGCACAGGTGGCCGACGCCCTGCAG ACCATTGATACAGAACTGGATAAGGAAGTGGCCAGTGCCAAGGCGATTCAGGACGAAATTCGTGAATACCTGATGGGCAT TCCCAACGTCCCGCAAGAAGCCGTACCTGCAGGCAATGATGAAGACGACAATGTGGAAGTGCGCCGCTGGGGCACACCGA AAACACTGCCGTTTGAGCCGAAGGACCATGTGGATATTGGTGAAGCGCTGGAGGGCGGGCTCGATTTTGAACGCGCGGCT AAGCTTTCCGGTGCACGTTTTGCAGTGATGAGCGGTGGCCTAGCCCGCATGCACCGGGCGCTGATTGATTTTATGCTGGA TATACACAGCGACGAGCATGGCTATCAGGAAGTGTACGTGCCTTTCCTAGTGGGGCCGGAAGCGCTACGAGGAACTGGCC AGCTACCCAAGTTCGCTGAAGACCTGTTTAAAATAGAAGGTGAGCGTGAACTCTATTTGATTCCCACCGCTGAAGTGCCG GTGACCAATCTGGCCGCGGATGAAATTCTCGAAGCGAACACCATGCCCCGTCGTTATACCTGTCATACACCGTGTTTTCG TTCTGAAGCGGGCAGCCACGGTAGAGATACCCGCGGTATGATTCGCCAGCATCAGTTCGAAAAAGTGGAGCTGGTGCAGA TGGTTCGCCCTGAAGAGTCCGATGCGGCGCTGGAGGCACTGACCGGCCATGCGGAAGCCATTTTACAGAAACTGGATTTG CCATATCGAGTGGTGATTCTTTGTGGCGGTGATTTGGGCTTTTCGTCTTCCAAAACCTATGACATCGAAGTCTGGCTTCC CAGCCAGCAGTGCTATCGGGAAATTTCTTCCTGTTCCAACTTCCGTGATTATCAATCACGTCGCATGCAGGCTCGCTGGC GCAACCCGGAAACCGGTAAACCCGAATTGGTACATACCTTGAATGGGTCTGCTCTGGCAGTAGGGCGTACTTTAGTAGCG ATACTGGAGAATTATCAGAACGATGATGGTTCAGTAACTGTTCCTGAGGCACTGCGTCCCTACATGAGAGGTCTGGAACG CCTGAAATAG Protein sequence : MLDIRALRQDGEAIKAALSKRGYTLDLEEFAALDAKRKQADMRSQELQADRKKASKQVGELIKSGMAVDEAKAQVADALQ TIDTELDKEVASAKAIQDEIREYLMGIPNVPQEAVPAGNDEDDNVEVRRWGTPKTLPFEPKDHVDIGEALEGGLDFERAA KLSGARFAVMSGGLARMHRALIDFMLDIHSDEHGYQEVYVPFLVGPEALRGTGQLPKFAEDLFKIEGERELYLIPTAEVP VTNLAADEILEANTMPRRYTCHTPCFRSEAGSHGRDTRGMIRQHQFEKVELVQMVRPEESDAALEALTGHAEAILQKLDL PYRVVILCGGDLGFSSSKTYDIEVWLPSQQCYREISSCSNFRDYQSRRMQARWRNPETGKPELVHTLNGSALAVGRTLVA ILENYQNDDGSVTVPEALRPYMRGLERLK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-100 | 52 |
