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Name : oppF (ABO_1216) Accession : YP_692936.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Unknown Product : oligopeptide ABC transporter ATP-binding protein Function : - COG functional category : R : General function prediction only COG ID : COG4172 EC number : - Position : 1383777 - 1385378 bp Length : 1602 bp Strand : - Note : (oligopeptide ABC transporter, ATP-binding protein) identified ba sequence similarity and by match to PFAM protein family HMMPF00005; InterPro: AAA ATPase superfamily; High confidence in function and specificity DNA sequence : ATGAGTCTGTTACGCATCGAAGGGCTGAGTATTCGTTTTGCCGGTCAGCTTGCCGTTGATGACATGTCGCTGGAACTCCA TCCCGGCCGTATGCTGGCGCTGGTGGGCGAGTCTGGTTCCGGAAAATCCCTCACTGCCCTGTCGGTGATGGATCTGCTGC CGGAAAACGCACAGTGGCAGGCTGAAAGCCTGCAACTGGATGGCACCGATCTACAGTCACTCAACCGCGAACAGAAACGT AAACTGCGTGGTGGCCGTATCGGCATGATTTTCCAGGAACCGCTGACCGCCCTCAATCCATTACATACGGTAGAGAAACA AATCAGCGAAAGTCTGTTCGTCCATCAGGGCATGAGCAAGCAGCGGGCCCGCGAGCGCTGCCTGACGCTGTTGGAACATG TCGAGCTACCCGCCACAGCCGATATGCTGAGCCGCTATCCGCACCAACTTAGCGGCGGCCAGCGGCAAAGGGTCATGATC GCCATGGCACTGGCTAATGAACCTCAGATACTCATCGCCGATGAGCCAACCACCGCCCTGGATGTAACGGTACAAGAAAC CATTCTCGATCTGATCAAACGCTTACAGAAAGAATTGAATCTTTCCATACTATTGATCAGCCACGACTTAGGTGTAGTCA GCCGTTTTGCCGAGGACATTGTGGTCATGCATAACGGCAAGCGTGTGGAATCTGGCCCCACCGAGACGGTATTAAGCCAA CCAACACAGGATTATACCCGTCACCTTATCGAGGCGGAGCCACAGGGGCGCGCCAAGCCATTGCCCGATGGCACCCCCGT GCTGCTGAGTGCCACCAACATTGCCGTCACTTTCAAGGGCAAGCGCCAGTCTCTGTTCACGCCACCAAGCCTGCTACACG CGGTAGACCACATCAATCTTACCCTGCGCGAGGGTGAAACCCTGGGTATCGTTGGTGAATCTGGCTCAGGTAAATCGACC CTGGCCCTGGCTTTACTGCGCTTGATCAAGAGTGACGGTGACATTGACATGAATGGCACTGATATTCGCGCCCTCTCTCG CACAGGATTACGGCAATGGCGCAGCCATTTTCAAGTGGTATTCCAGGACCCCTATGGCAGCCTCAACCCGCGCATGACAG TAGGCCAAATCGTCGCCGAAGGCTTGGCCGTTCACGCTCCAGAGCTGAGGAGTACAGAGCGGGAAAATCGTGTCTGCCGC ATTCTCGAGGAGGTCGGGTTGCCCATTACCGTTCGTCACCGTTACCCCCATGAGTTTTCTGGCGGGCAACGCCAGCGCAT TGCCATTGCCCGTGCGCTCATCATGGAGCCTGCATTACTGGTGCTGGACGAACCCACCTCAGCGCTGGATCGCAGTGTTC AGCACCAGATACTGGAATTGCTGAAGGCACTACAACAGCGACGGGGACTCAGCTATCTGTTTATCAGCCATGATCTGAAA GTTATCCGTGCTATTTGTCACCGTGTGTTGGTGATGAAAGACGGCAAACCCGTGGAACAGGGCGATACTGAGGCCATTTT TGAAAACCCACAGCAACCGTACACCCAGACGCTGATCGATGCGGCCTTTGCCAACAGCAGGAAACAGACGGTTGCACTTT GA Protein sequence : MSLLRIEGLSIRFAGQLAVDDMSLELHPGRMLALVGESGSGKSLTALSVMDLLPENAQWQAESLQLDGTDLQSLNREQKR KLRGGRIGMIFQEPLTALNPLHTVEKQISESLFVHQGMSKQRARERCLTLLEHVELPATADMLSRYPHQLSGGQRQRVMI AMALANEPQILIADEPTTALDVTVQETILDLIKRLQKELNLSILLISHDLGVVSRFAEDIVVMHNGKRVESGPTETVLSQ PTQDYTRHLIEAEPQGRAKPLPDGTPVLLSATNIAVTFKGKRQSLFTPPSLLHAVDHINLTLREGETLGIVGESGSGKST LALALLRLIKSDGDIDMNGTDIRALSRTGLRQWRSHFQVVFQDPYGSLNPRMTVGQIVAEGLAVHAPELRSTERENRVCR ILEEVGLPITVRHRYPHEFSGGQRQRIAIARALIMEPALLVLDEPTSALDRSVQHQILELLKALQQRRGLSYLFISHDLK VIRAICHRVLVMKDGKPVEQGDTEAIFENPQQPYTQTLIDAAFANSRKQTVAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-88 | 45 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 6e-88 | 45 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-88 | 45 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 6e-88 | 45 |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 5e-95 | 43 |
