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Name : kdsB (ABO_1057) Accession : YP_692777.1 Strain : Alcanivorax borkumensis SK2 Genome accession: NC_008260 Putative virulence/resistance : Virulence Product : 3-deoxy-D-manno-octulosonate cytidylyltransferase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1212 EC number : 2.7.7.38 Position : 1198991 - 1199746 bp Length : 756 bp Strand : + Note : (3-deoxy-D-manno-octulosonatecytidylyltransferase) 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) (cmp-kdo synthetase) (cmp-2-keto-3-deoxyoctulosonic acid synthetase) (cks).; High confidence in function and specificity DNA sequence : ATGAGCTTTTACGTAGTTGTGCCGGCACGGTATGCGTCTACCCGTTTGCCGGGCAAGCCGTTGGCGGATATTGCCGGGAA AACCATGGTGGAGCGGGTGGCGCAGCGCTGCCAGCAAAGTGATGCTGATCAGATTTATGTGGCTACCGACGATCGTCGTA TTGCCGATGTGCTGGGTGACACCGTGCCCGTGGTTATGACGCGAGAGGATCATCCTTCTGGGACAGATCGTCTTCAAGAG GTGGCTACAAAACTTGCCTTGGCCGACGACGACATTATCGTCAATGTACAGGGTGACGAGCCGTTAATCCCCCCTGCGGT GATCAATCAAGTGGCGGCAAACCTGGCGGCGAACCCGGACTGCCAGATGGCGACCCTGTGTGAAGCCATCGAAAATTCTG ATGACCTATTTAATCCTAATGTGGTGAAAGCCGTCTTCGATAATAGGGGCAAGGCATTATATTTTTCCCGAGCGCCGGTG CCTTGGCACCGTGATGCCTTTGCCGATGGCCAACAAGATTTGTCGGGTGGGCAGTGGTGGAGGCATATCGGCATTTATGC ATATCGGGTAGCTTTTTTGCATCAGTATGTGCAATGGCAGCCGGCGACACTGGAGAAGCTGGAGTCTTTGGAGCAGCTCC GCGCTATGGCCAATGGGGTAGCGATTCATGTGGAGCCTGCCTGTGAAGTGGTTCCTGGCGGTGTGGATACACAGACGGAT CTTGAACGTTTGCGAGCCCAGCTGGGAGGCCAATAA Protein sequence : MSFYVVVPARYASTRLPGKPLADIAGKTMVERVAQRCQQSDADQIYVATDDRRIADVLGDTVPVVMTREDHPSGTDRLQE VATKLALADDDIIVNVQGDEPLIPPAVINQVAANLAANPDCQMATLCEAIENSDDLFNPNVVKAVFDNRGKALYFSRAPV PWHRDAFADGQQDLSGGQWWRHIGIYAYRVAFLHQYVQWQPATLEKLESLEQLRAMANGVAIHVEPACEVVPGGVDTQTD LERLRAQLGGQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsU | CAE85213.1 | KpsU protein | Virulence | PAI V 536 | Protein | 3e-39 | 42 |
| kpsU | YP_854332.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | Not tested | PAI I APEC-O1 | Protein | 2e-38 | 41 |
| kpsU | AAZ04469.1 | CMP-KDO synthetase | Virulence | PAI I APEC-O1 | Protein | 1e-38 | 41 |
