Gene Information

Name : SFV_0723 (SFV_0723)
Accession : YP_688267.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : ISSfl4 ORF3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 756237 - 757838 bp
Length : 1602 bp
Strand : -
Note : Code: L; COG: COG3436

DNA sequence : 
ATGAACAATGAACTCCCCGATGATATTGAGCTGCTTAAAGCCATGTTGCGTAAGCAACAGAGTCGGCTTCGACAGTATGC
CTGTCAGGTCGCGGGCTATGAGCAGGAAATTGAACGGCTGAAAGCGCAACTCGACAGGTTGCGTCGTATGTTGTTCGGCC
AGAGTTCAGAGAAAAAGCGTCATAAGCTTGAAAATCTGATCCGACAGGCAGAAAAACGACTGTCGGAACTGGAAAACCGG
CTGAACACAGCCAGAAATCTTCTGGAAGATGCATCGTCAGTCACAGATTCACCTGACACCAGTCCCCCGTCAGAAAACCC
GATCGCCAGTAAGCCTGAATTCCCGGGACGAAAATCTTCACGAAAACCGCTGCCGGCAGAACTTCCCCGGGAGACACATC
GCCTTCTGCCTGCTGAAACCAGTTGCCCGGCCTGTGGAGGTGTTCTGAAAGAAATGGGGGAAACAATCTCAGAGCAACTG
GATATCATTAATACCGCCTTTAAAGTTATCGAAACCATACGTCCCAAACTGGCCTGTAGCCGGTGTGATGTCATCGTTCA
GGCACCACTTCCTCCTAAACCGATCGAACGCGGTTATGCCAGTGCAGGGTTACTTGCACGGATCCTGGTCAGCAAATATA
TGGAACATATCCCTTTATATCGCCAGTCAGAAATATACGCGCGACAGGGCGTGGAGCTGAGCCGTAATACCATGGTGCGC
TGGGTATCAGAAATGGCAGACAAACTCCGTCCTCTGTATATAGCGCTGAATGACTATGTTCTGGAGGCAGGAAAGGTGCA
CGCAGATGACACTCCGGTGAAAGTACTGGCCCCGGGGAACGGAAAGACGAAAACGGGTCGTCTGTGGGTATACGTCAGGG
ATGATCGTAATGCGGGTTCATCCCTGCCGGCAGCCGTCTGGTTCGCGTATTCGGCAGATCGCAAAGGAGAACATCCGCAG
CTCCACCTGGCAAAGTATCAGGGCGTACTGCAGGCTGATGCCTATGCAGGTTATAACGTACTGTACGAAACGGGCCGGGT
GAAGGAAGCCGGGTGCCTGGCCCACGCCCGCCGAAAAATCCATGACGAGGATGTGCGCCGTCCGACAGAAATGACTCAGG
AAGCGCTCAGACGGATAGCAGAGTTATACGACATAGAAGCGGAGATACGTGGCAGTCCGGCAGAGGAACGGCTTGCAGTC
AGAAAAGCCAGAAGCGTCCAGTTGATGCAGTCGTTGTACGACTGGATACAGTTGCAGAGGAAAACGCTGTCGAAACATGC
GGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGAACGAGTTCTGTCGTGACGGCTGGGTGGAAA
TAGACAACAACATCGGTGAAAACGCGTTACGATCGGTGGCGGTTGGAAGAAAAAATTATCTCTTTTTCGGCTCAGACAAG
GGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACAGAACGAAGTGGAGCCGGAGGACTGGTTGCG
CGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAACTGCTGCCCTGGAACTTCTCGTCTGTAAAAT
AA

Protein sequence : 
MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENLIRQAEKRLSELENR
LNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR
WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQ
LHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAV
RKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDK
GGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 9e-150 64
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 3e-150 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 2e-128 63
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 8e-149 59
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-116 57
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 1e-134 55
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 6e-135 55
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 6e-135 55
unnamed AAC31494.1 L0015 Not tested LEE Protein 5e-135 55
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 5e-135 55
tnp AEA34686.1 transposase Not tested Not named Protein 5e-136 55
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 3e-134 55
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 3e-134 55
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 1e-134 55
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 6e-135 55
unnamed AAL57570.1 unknown Not tested LEE Protein 1e-134 55
unnamed AAL08460.1 unknown Not tested SRL Protein 8e-97 53
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 3e-117 51
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 3e-117 51
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 4e-120 50
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 3e-75 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_0723 YP_688267.1 ISSfl4 ORF3 VFG0793 Protein 3e-135 55
SFV_0723 YP_688267.1 ISSfl4 ORF3 VFG1051 Protein 5e-97 53
SFV_0723 YP_688267.1 ISSfl4 ORF3 VFG1736 Protein 6e-98 51