Gene Information

Name : kdpE (SFV_0639)
Accession : YP_688192.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional activator KdpE
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 676153 - 676755 bp
Length : 603 bp
Strand : +
Note : response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport

DNA sequence : 
ATGCGCGTCTTTGAGGCCGAAACTCTGCAACGCGGCTTGCTGGAAGCGGCAACCCGTAAGCCAGATTTGATTATTCTCGA
TCTCGGCCTGCCCGATGGTGATGGGATTGAGTTTATCCGCGACCTGCGCCAGTGGAGCCCGGTGCCGGTGATTGTGCTTT
CCGCACGCAGCGAAGAGAGCGACAAGATCGCCGCGCTGGATGCCGGAGCGGATGATTATCTGAGTAAGCCGTTTGGTATT
GGCGAATTGCAGGCCCGTCTGCGCGTCGCTTTACGCCGCCACTCCGCCACCGCCGCGCCCGATCCGCTGGTGAAATTTTC
CGATGTTACCGTCGATTTAGCCGCCCGCGTGATTCACCGGGGTGAGGAAGAGGTGCATCTCACACCAATTGAGTTCCGCC
TGCTGGCGGTGCTGCTCAACAATGCCGGAAAAGTACTCACCCAGCGCCAGCTCCTTAACCAGGTGTGGGGGCCAAACGCG
GTCGAACACAGTCACTATTTGCGTATTTATATGGGACATCTGCGACAAAAACTGGAACAGGATCCGGCCCGGCCTCGCCA
CTTCATTACTGAAACCGGTATTGGGTATCGGTTTATGCTTTGA

Protein sequence : 
MRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGI
GELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNA
VEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 8e-25 42
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 3e-25 42
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 5e-25 42
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 8e-25 42
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 8e-25 42
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 8e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_688192.1 DNA-binding transcriptional activator KdpE VFG1390 Protein 8e-28 43