Gene Information

Name : fimC (SFV_4210)
Accession : YP_691499.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Virulence
Product : periplasmic chaperone
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 4350081 - 4350737 bp
Length : 657 bp
Strand : -
Note : Code: NU; COG: COG3121

DNA sequence : 
ATGTTCATGGCAATGATGGTTGCCGGACGCGCTGAAGCAGGAGTGGCCTTAGGTACGACTCGCGTAATTTATCCGGCAGG
GCAAAAACAAGTGCAACTTGCCGTGACAAATAATGATGAAAATAGTACCTATTTAATTCAATCATGGGTGGAAAATGCCG
ATGGTGTAAAGGATGGTCGTTTTATCGTGACGCCTCCTCTGTTTGCGATGAAGGGAAAAAAAGAGAATACCTTACGTATT
CTTGATGCAACAAATAACCAATTGCCACAGGACCGGGAAAGTTTATTCTGGATGAACGTTAAAGCGATTCCGTCAATGGA
TAAATCAAAATTGACTGAGAATATGCTACAGCTCGCAATTATCAGCCGCATTAAACTGTACTATCGCCCGGCTAAATTAG
CGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCC
TATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAAAATGCATTGGTGCCTCCAATGGGCGAAAGCAC
GGTTAAATTGCCTTCTGATGCAGGAAGCAATATTACTTACCGAACAATAAATGATTATGGCGCACTTACCCCCAAAATGA
CGGGCGTAATGGAATAA

Protein sequence : 
MFMAMMVAGRAEAGVALGTTRVIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRI
LDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENMLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTP
YYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-83 84
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-70 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_691499.1 periplasmic chaperone VFG0875 Protein 2e-98 99
fimC YP_691499.1 periplasmic chaperone VFG0911 Protein 2e-70 66
fimC YP_691499.1 periplasmic chaperone VFG1644 Protein 2e-70 66
fimC YP_691499.1 periplasmic chaperone VFG0445 Protein 5e-53 49
fimC YP_691499.1 periplasmic chaperone VFG0455 Protein 4e-40 41