Gene Information

Name : SFV_4190 (SFV_4190)
Accession : YP_691479.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : ISSfl4 ORF3
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 4329362 - 4330963 bp
Length : 1602 bp
Strand : -
Note : Code: L; COG: COG3436

DNA sequence : 
ATGAACAATGAACTCCCCGATGATATTGAGCTGCTTAAAGCCATGTTGCGTAAGCAACAGAGTCGGCTTCGACAGTATGC
CTGTCAGGTCGCGGGCTATGAGCAGGAAATTGAACGGCTGAAAGCGCAACTCGACAGGTTGCGTCGTATGTTGTTCGGCC
AGAGTTCAGAGAAAAAGCGTCATAAGCTTGAAAATCAGATCCGACAGGCAGAAAAACGACTGTCGGAACTGGAAAACCGG
CTGAACACAGCCAGAAATCTTCTGGAAGATGCATCGTCAGTCACAGATTCACCTGACACCAGTCCCCCGTCAGAAAACCC
GATCGCCAGTAAGCCTGAATCCCCGGGACGAAAATCTTCACGAAAACCGCTGCCGGCAGAACTTCCCCGGGAGACACATC
GCCTTCTGCCTGCTGAAACCAGTTGCCCGGCCTGTGGAGGTGTTCTGAAAGAAATGGGGGAAACAATCTCAGAGCAACTG
GATATCATTAATACCGCCTTTAAAGTTATCGAAACCATACGTCCCAAACTGGCCTGTAGCCGGTGTGATGTCATCGTTCA
GGCACCACTTCCTCCTAAACCGATCGAACGCGGTTATGCCAGTGCAGGGTTACTTGCACGGATCCTGGTCAGCAAATATA
TGGAACATATCCCTTTATATCGCCAGTCAGAAATATACGCGCGACAGGGCGTGGAGCTGAGCCGTAATACCATGGTGCGC
TGGGTATCAGAAATGGCAGACAAACTCCGTCCTCTGTATATAGCGCTGAATGACTATGTTCTGGAGGCAGGAAAGGTGCA
CGCAGATGACACTCCGGTGAAAGTACTGGCCCCGGGGAACGGAAAGACGAAAACGGGTCGTCTGTGGGTATACGTCAGGG
ATGATCGTAATGCGGGTTCATCCCTGCCGGCAGCCGTCTGGTTCGCGTATTCGGCAGATCGCAAAGGAGAACATCCGCAG
CTCCACCTGGCAAAGTATCAGGGCGTACTGCAGGCTGATGCCTATGCAGGTTATAACGTACTGTACGAAACGGGCCGGGT
GAAGGAAGCCGGGTGCCTGGCCCACGCCCGCCGAAAAATCCATGACGAGGATGTGCGCCGTCCGACAGAAATGACTCAGG
AAGCGCTCAGACGGATAGCAGAGTTATACGACATAGAAGCGGAGATACGTGGCAGTCCGGCAGAGGAACGGCTTGCAGTC
AGAAAAGCCAGAAGCGTCCAGTTGATGCAGTCGTTGTACGACTGGATACAGTTGCAGAGGAAAACGCTGTCGAAACATGC
GGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGAACGAGTTCTGTCGTGACGGCTGGGTGGAAA
TAGACAACAACATCGATGAAAACGCGTTACGATCGGTGGCGGTTGGAAGAAAAAATTATCTCTTTTTCGGCTCAGACAAG
GGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACAGAACGAAGTGGAGCCGGAGGACTGGTTGCG
CGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAACTGCTGCCCTGGAACTTCTCGTCTGTAAAAT
AA

Protein sequence : 
MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENR
LNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR
WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQ
LHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAV
RKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIDENALRSVAVGRKNYLFFGSDK
GGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 3e-151 65
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 1e-150 64
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 9e-129 61
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 4e-150 60
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 2e-116 57
unnamed AAC31494.1 L0015 Not tested LEE Protein 2e-135 56
tnp AEA34686.1 transposase Not tested Not named Protein 2e-136 56
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 6e-135 56
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 5e-135 56
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 3e-135 56
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 3e-135 56
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-135 56
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-135 56
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-134 55
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-134 55
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 2e-135 55
l0015 CAD33775.1 L0015 protein Not tested PAI I 536 Protein 5e-87 54
unnamed AAL08460.1 unknown Not tested SRL Protein 4e-97 53
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 2e-118 51
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 2e-118 51
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 3e-121 50
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 1e-75 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_4190 YP_691479.1 ISSfl4 ORF3 VFG0793 Protein 1e-135 56
SFV_4190 YP_691479.1 ISSfl4 ORF3 VFG1516 Protein 3e-87 54
SFV_4190 YP_691479.1 ISSfl4 ORF3 VFG1051 Protein 2e-97 53
SFV_4190 YP_691479.1 ISSfl4 ORF3 VFG1736 Protein 2e-98 52