Gene Information

Name : SFV_3499 (SFV_3499)
Accession : YP_690843.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Virulence
Product : periplasmic fimbrial chaperone protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3567843 - 3568646 bp
Length : 804 bp
Strand : -
Note : Code: NU; COG: COG3121

DNA sequence : 
GTGAACGCGGATTTATCAGTTGTCGAAATGGTTTTTATAATAATGAAAAATTTTAATGTACTAACCAAAGTCGTATTTTG
CTTGTCGTTTTTATCAAGCGCATTTCCCACCTATGCTGCGGATGATGTCAAAGTGACTCAAAACACTTCAGTTTTTAAAC
TGAAGCTTAGTGCAACGCGATTAATCTATGAACAAGGGTCGGATGGCGCAGCGATAACTGTGACAAATCCGCAGGATTGG
CCGATGCTTGTGCAGAGTAAAGTCTTTGAAGAAGATAAAGTAACTGCAGCGCCCTTTATTGTCACTCCGCCACTGTTCAG
GCTTAATCCAGGCCAGCAAAATAAAATGTGGGTTGTGCAGACTGCGCCAGCTTTACAAGACAGGGAAAAATTACACTGGC
TATGCGCCACCGGCATTACGCCTAAAAAGAGTGATGTTTGGGCCGAGAAAGATAAAGAAAAAATTGCTGAAAATGTGAAC
CTGAACATCCAGGTTAACGTACATACCTGCATAAAACTTATTACCAGGCCATCTGGTATTGAAGGCAAGATGGTTAATGC
GAGTGAGAAGTTATCGTGGAAAAAGCAGGGTGATAAAATTGTCGCGGTCAATCAGTCGCCGTTCTACATCAACCTTTCTT
CTTTACAGGTTGGCGGTAGCAAGATTGAGAAACTAGATTATATTGCGCCGTTTTCGCAACATGAGTTTGTTATGCCAAAA
ACTAGCGGCCAGGATATTAAATGGTCTGTGATTACTGATGAAGGTGGTGAGAGTCGTTTGTTTATATCTCATTTGCAATC
ATAA

Protein sequence : 
MNADLSVVEMVFIIMKNFNVLTKVVFCLSFLSSAFPTYAADDVKVTQNTSVFKLKLSATRLIYEQGSDGAAITVTNPQDW
PMLVQSKVFEEDKVTAAPFIVTPPLFRLNPGQQNKMWVVQTAPALQDREKLHWLCATGITPKKSDVWAEKDKEKIAENVN
LNIQVNVHTCIKLITRPSGIEGKMVNASEKLSWKKQGDKIVAVNQSPFYINLSSLQVGGSKIEKLDYIAPFSQHEFVMPK
TSGQDIKWSVITDEGGESRLFISHLQS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 1e-47 42
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 1e-47 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_3499 YP_690843.1 periplasmic fimbrial chaperone protein VFG0943 Protein 3e-50 48
SFV_3499 YP_690843.1 periplasmic fimbrial chaperone protein VFG0852 Protein 4e-49 46
SFV_3499 YP_690843.1 periplasmic fimbrial chaperone protein VFG0850 Protein 2e-50 43
SFV_3499 YP_690843.1 periplasmic fimbrial chaperone protein VFG0858 Protein 6e-49 42