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Name : SFV_3312 (SFV_3312) Accession : YP_690660.1 Strain : Shigella flexneri 8401 Genome accession: NC_008258 Putative virulence/resistance : Unknown Product : ISSfl4 ORF3 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3436 EC number : - Position : 3383821 - 3385422 bp Length : 1602 bp Strand : + Note : Code: L; COG: COG3436 DNA sequence : ATGAACAATGAACTCCCCGATGATATTGAGCTGCTTAAAGCCATGTTGCGTAAGCAACAGAGTCGGCTTCGACAGTATGC CTGTCAGGTCGCGGGCTATGAGCAGGAAATTGAACGGCTGAAAGCGCAACTCGACAGGTTGCGTCGTATGTTGTTCGGCC AGAGTTCAGAGAAAAAGCGTCATAAGCTTGAAAATCAGATCCGACAGGCAGAAAAACGACTGTCGGAACTGGAAAACCGG CTGAACACAGCCAGAAATCTTCTGGAAGATGCATCGTCAGTCACAGATTCACCTGACACCAGTCCCCCGTCAGAAAACCC GATCGCCAGTAAGCCTGAATCCCCGGGACGAAAATCTTCACGAAAACCGCTGCCGGCAGAACTTCCCCGGGAGACACATC GCCTTCTGCCTGCTGAAACCAGTTGCCCGGCCTGTGGAGGTGTTCTGAAAGAAATGGGGGAAACAATCTCAGAGCAACTG GATATCATTAATACCGCCTTTAAAGTTATCGAAACCATACGTCCCAAACTGGCCTGTAGCCGGTGTGATGTCATCGTTCA GGCACCACTTCCTCCTAAACCGATCGAACGCGGTTATGCCAGTGCAGGGTTACTTGCACGGATCCTGGTCAGCAAATATA TGGAACATATCCCTTTATATCGCCAGTCAGAAATATACGCGCGACAGGGCGTGGAGCTGAGCCGTAATACCATGGTGCGC TGGGTATCAGAAATGGCAGACAAACTCCGTCCTCTGTATATAGCGCTGAATGACTATGTTCTGGAGGCAGGAAAGGTGCA CGCAGATGACACTCCGGTGAAAGTACTGGCCCCGGGGAACGGAAAGACGAAAACGGGTCGTCTGTGGGTATACGTCAGGG ATGATCGTAATGCGGGTTCATCCCTGCCGGCAGCCGTCTGGTTCGCGTATTCGGCAGATCGCAAAGGAGAACATCCGCAG CTCCACCTGGCAAAGTATCAGGGCGTACTGCAGGCTGATGCCTATGCAGGTTATAACGTACTGTACGAAACGGGCCGGGT GAAGGAAGCCGGGTGCCTGGCCCACGCCCGCCGAAAAATCCATGACGAGGATGTGCGCCGTCCGACAGAAATGACTCAGG AAGCGCTCAGACGGATAGCAGAGTTATACGACATAGAAGCGGAGATACGTGGCAGTCCGGCAGAGGAACGGCTTGCAGTC AGAAAAGCCAGAAGCGTCCAGTTGATGCAGTCGTTGTACGACTGGATACAGTTGCAGAGGAAAACGCTGTCGAAACATGC GGAGATGGCGAAGGCGTTCGACTATATCCTGAATCACTGGAATGCGCTGAACGAGTTCTGTCGTGACGGCTGGGTGGAAA TAGACAACAACATCGGTGAAAACGCGTTACGATCGGTGGCGGTTGGAAGAAAAAATTATCTCTTTTTCGGCTCAGACAAG GGAGGAGAAAGTGCGGCGATCATCTACAGTCTGCTGGTCACCTGCAAACAGAACGAAGTGGAGCCGGAGGACTGGTTGCG CGAAGTGATCGAGAAGCTCAATGACTGGCCGTCGAACCAAGTGCATGAACTGCTGCCCTGGAACTTCTCGTCTGTAAAAT AA Protein sequence : MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENR LNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVR WVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQ LHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAV RKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDK GGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ECO103_3554 | YP_003223421.1 | hypothetical protein | Not tested | LEE | Protein | 3e-151 | 65 |
| Z4317 | NP_289543.1 | hypothetical protein | Not tested | OI-122 | Protein | 9e-151 | 64 |
| st57 | CAC81895.1 | ST57 protein | Not tested | LEE II | Protein | 8e-129 | 61 |
| aec53 | AAW51736.1 | Aec53 | Not tested | AGI-3 | Protein | 4e-150 | 60 |
| Z4340 | NP_289564.1 | hypothetical protein | Not tested | OI-122 | Protein | 1e-116 | 57 |
| tnp | AEA34686.1 | transposase | Not tested | Not named | Protein | 1e-136 | 56 |
| ECs4547 | NP_312574.1 | hypothetical protein | Not tested | LEE | Protein | 5e-135 | 56 |
| unnamed | ACU09439.1 | IS66 family element transposase | Not tested | LEE | Protein | 3e-135 | 56 |
| Z4337 | NP_289562.1 | hypothetical protein | Not tested | OI-122 | Protein | 2e-135 | 56 |
| Z5098 | NP_290249.1 | prophage-associated protein | Not tested | LEE | Protein | 2e-135 | 56 |
| unnamed | AAC31494.1 | L0015 | Not tested | LEE | Protein | 1e-135 | 56 |
| unnamed | AAL57570.1 | unknown | Not tested | LEE | Protein | 3e-135 | 56 |
| unnamed | CAI43806.1 | hypothetical protein | Not tested | LEE | Protein | 2e-135 | 56 |
| Z1131 | NP_286666.1 | hypothetical protein | Not tested | TAI | Protein | 1e-134 | 55 |
| Z1570 | NP_287074.1 | hypothetical protein | Not tested | TAI | Protein | 1e-134 | 55 |
| unnamed | CAC39285.1 | hypothetical protein | Not tested | LPA | Protein | 2e-135 | 55 |
| l0015 | CAD33775.1 | L0015 protein | Not tested | PAI I 536 | Protein | 4e-87 | 54 |
| unnamed | AAL08460.1 | unknown | Not tested | SRL | Protein | 4e-97 | 53 |
| Z1161 | NP_286696.1 | hypothetical protein | Not tested | TAI | Protein | 1e-118 | 51 |
| Z1600 | NP_287104.1 | hypothetical protein | Not tested | TAI | Protein | 1e-118 | 51 |
| BCAM0248 | YP_002232880.1 | putative transposase | Not tested | BcenGI11 | Protein | 2e-121 | 50 |
| tnp | AEA34687.1 | IS66 family transposase | Not tested | Not named | Protein | 1e-75 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SFV_3312 | YP_690660.1 | ISSfl4 ORF3 | VFG0793 | Protein | 8e-136 | 56 |
| SFV_3312 | YP_690660.1 | ISSfl4 ORF3 | VFG1516 | Protein | 3e-87 | 54 |
| SFV_3312 | YP_690660.1 | ISSfl4 ORF3 | VFG1051 | Protein | 2e-97 | 53 |
| SFV_3312 | YP_690660.1 | ISSfl4 ORF3 | VFG1736 | Protein | 1e-98 | 52 |
