Gene Information

Name : SFV_3244 (SFV_3244)
Accession : YP_690599.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 3317177 - 3317479 bp
Length : 303 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGACGCTTCCCGATTATTCCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGCTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCGCTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09021.1 unknown Not tested SHI-O Protein 2e-38 98
unnamed AAF09029.1 unknown Not tested SHI-O Protein 2e-38 98
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 3e-38 97
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 3e-38 97
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-38 96
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 5e-38 96
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 5e-32 95
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 5e-32 95
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 4e-08 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_3244 YP_690599.1 IS600 ORF1 VFG1707 Protein 2e-38 96