Gene Information

Name : qseB (SFV_3071)
Accession : YP_690439.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3136733 - 3137365 bp
Length : 633 bp
Strand : +
Note : quorum sensing Escherichia coli regulator B; response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCTGATTGGTGACGGCATCAAAACTGGCCTTAGTAAAATGGGTTTTAGTGTCGACTGGTTTACACAAGGTCGTCAGGG
AAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCTTACCAGGCATGGATGGTCGCGATATTT
TGCGCGAATGGCGAGAGAAAGGTCAGCGTGAGCCGGTACTGAACCTGACCGCGCGTGATGCGTTAGCGGAACGTGTAGAA
GGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGAAGTCGCCGCCAGGCTGGAGGCTCTGAT
GCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGCTCGACCCCGGCAAACGTATCGCCACGC
TGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTACTGATGCGTAACGCTGGTCGGGTACTG
CCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAGTAATGCCGTTGAAGTGCATGTGCATCA
TCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCTACACATTAGGTGAGAAATGA

Protein sequence : 
MLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLNLTARDALAERVE
GLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL
PRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 4e-35 44
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 1e-37 44
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 2e-28 43
qseB YP_690439.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 5e-28 43
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 2e-30 42
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 1e-31 41
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 5e-34 41
qseB YP_690439.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
qseB YP_690439.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 2e-36 48
qseB YP_690439.1 DNA-binding transcriptional regulator QseB VFG1386 Protein 8e-26 42
qseB YP_690439.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 7e-29 41