Gene Information

Name : intA (SFV_2851)
Accession : YP_690233.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2913326 - 2914549 bp
Length : 1224 bp
Strand : -
Note : CP4-57 prophage; integrase

DNA sequence : 
ATGGTAAGACAAACCAAACCTCTATCCGTTAAGGAAATCGAATCTGCTAAACCCAAGGAAGCGGACTACGTTCTCTATGA
TGGCGATGGCCTTGAGCTACTCATTAAATCCAGCGGGAGTAAAATCTGGCAGTTTCGCTACATTCGCCCTGTCACCAAGA
CACGAGCAAAGAAAAGCATAGGCCCTTACCCGTCAGTTACCCTTGCCGATGCCAGAAACTACCGTGCAGAGTCCCGCTCA
CTCCTAGCTAAACAGATTGATCCGCAGGAACATCAGCAAGAACAATTGCGTAGTTCGCTGGAAGCCAAAACCAATACTTT
CCAGCTCGTAGCTGAACGTTGGTGGAATGTGAAGAAAGCCAGTGTGACAGAGGACTATGCGGAAGATATCTGGCGCTCTC
TTGAAAGAGATGTCTTTCCTGCGATTGGCGACGTTAGCGTTACAGATATTAAAGCTCATACACCGGTTCAGGCCAGAGGA
GCACTGGAAACGGTTCGTCGCCTGTGTCAACGTATTAATGAGGTCATGATCTATGCCCAGAACACAGGGCTGATTGATGC
TGTTCCCAGCGTTAATATCGGTAAAGCCTTCGAAAAGCCTCAGAAAAAGAACATGCCCAGCATTCGACCGGATCAGCTAT
CTCAACTGATGCAGACAATGCGAACAGCCAGCATTAGCCTTTCCACACGCTGCCTGTTCATGTGGCAACTTCTTACTATT
ACCCGCCCTGCCGAAGCGGCTGAAGCTCGCTGGGAAGAAGTAGACATAGAAGCGCAAGAGTGGAAGATTCCCGCAGCACG
CATGAAAATGAACCGCGACCATACTGTTCCATTGTCAGATGAAGCAATAGCTGTGCTGGAGATGATGAAACCGCTAAGCG
GCAACCGAGAATTTATCTTTCCTAGCCGTATCAAGCCCAACCAGCCTATGAACAGTCAGACTGTTAACGCCTCACTAAAA
CGCGCAGGTTTTGGTGGTGTGCTTGTTTCGCATGGTCTGAGATCAATTGCCAGTACGGCTCTTAATGAACAAGGCTTTCC
GCCTGATGCCATTGAGGCAGCATTGGCCCATGTGGATAAGAATGAGGTTCGTCGTGCTTATAACCGCAGCGATTACCTGG
AACAGCGTCGCCCGATGATGCAATGGTGGGCAAATTTTGTGATGGCAGCGGATCGTGGAAGCATGATTGAAGGTGGGATA
AAAGGAATGAAGCTAGTTGGGTGA

Protein sequence : 
MVRQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQFRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRS
LLAKQIDPQEHQQEQLRSSLEAKTNTFQLVAERWWNVKKASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTPVQARG
ALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLSQLMQTMRTASISLSTRCLFMWQLLTI
TRPAEAAEARWEEVDIEAQEWKIPAARMKMNRDHTVPLSDEAIAVLEMMKPLSGNREFIFPSRIKPNQPMNSQTVNASLK
RAGFGGVLVSHGLRSIASTALNEQGFPPDAIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWANFVMAADRGSMIEGGI
KGMKLVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-97 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-97 52
int AAK20773.1 integrase Not tested VPI Protein 7e-98 52
int AAK20803.1 integrase Not tested VPI Protein 7e-98 52
unnamed AAA82714.1 integrase Not tested VPI Protein 7e-98 52
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-97 49
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-78 45
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-77 44
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-77 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA YP_690233.1 integrase VFG1092 Protein 5e-78 44