Gene Information

Name : SFV_2418 (SFV_2418)
Accession : YP_689832.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : IS911 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2469095 - 2469661 bp
Length : 567 bp
Strand : -
Note : -

DNA sequence :
ATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGT
GACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGG
CCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGG
GTGATGTTCCACAGCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACCAGATCAGACA
GAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAGCCCAATGGAACGCTTCTTCAGGAGTCTGAAGAACGAATGGATGC
CGGTGGTGGGTTACGTAAGCTTCAGCGAGGCAGCTCACGCCATAACGGACTATATCGTTGGATATTACAGCGCACTAAGA
CCGCACGAATATAACGGTGGGTTACCCCCAAACGAATCGGAAAATCGATACTGGAAAAACTCTAACTCGGTGGCCAGTTT
TTGTTGA

Protein sequence :
MNMLLSLTTLKGSSPVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGG
VMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALR
PHEYNGGLPPNESENRYWKNSNSVASFC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-75 91
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-75 91
unnamed CAI43898.1 putative transposase Not tested LEE Protein 6e-53 64
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 6e-53 64
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-53 62
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-53 62
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-53 62
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-53 62
tnpA AAD44733.1 TnpA Not tested SHI-2 Protein 7e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_2418 YP_689832.1 IS911 ORF2 VFG1484 Protein 7e-76 91
SFV_2418 YP_689832.1 IS911 ORF2 VFG0785 Protein 4e-54 62