|
Name : SFV_2004 (SFV_2004) Accession : YP_689449.1 Strain : Shigella flexneri 8401 Genome accession: NC_008258 Putative virulence/resistance : Unknown Product : ISEhe3 orfB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 2041759 - 2042571 bp Length : 813 bp Strand : - Note : Code: L; COG: COG2801 DNA sequence : GTGCTGGATGTTCATCCCAGTGTTTTTTACGCCTGGCTTCAGCAGCCGCATTCACAACGCCATCAGGCAGACCTGAGACT GACAGGACAGATTAAACAGTTCTGGCTGGAATCGGGATGCGTCTATGGTTATCGCAAAATCCATCTGGATCTGCGTGACA GCGGGCAACAGTGCGGAGTAAACAGAGTCTGGAGACTGATGAAACGTGTCGGAATAAAGGCTCAGGTCGGATACCGAAGC CCGCGGGCACGTAAAGGCGAGGCCAGTATCGTGTCACCCAACAGGCTCCAGCGACAGTTCAATCCGGATGCTCCTGATGA GCGTTGGGTAACGGACATAACCTACATCAGGACCCACGAAGGCTGGCTGTATCTTGCCGTTGTTGTTGATCTGTTCTCAC GCAAAATTATCGGCTGGTCCATGCAATCCCGGATGACAAAGGACATTGTCCTGAACGCACTGCTGATGGCTGTATGGTGG CGTAATCCCGAAAAACAGGTGCTGGTTCATTCGGATCAGGGCAGTCAGTACACAAGCCATGAGTGGCAGTCGTTCCTGAA ATCACACGGCCTGGAGGGTAGCATGAGCCGTCGCGGTAACTGCCATGATAATGCGGTTGCAGAAAGTTTTTTCCAGTTGT TGAAACGTGAACGGATAAAGAAAAAGATCTACGGAACGCGGGAAGAAGCCCGCAGTGATATTTTTGATTACATCGAAATG TTTTATAACAGTAAGCGTCGGCATGGTTCTAGCGAACAGATGTCACCGACAGAATATGAAAACCAGTATTATCAACGGCT CGGAAGTGTCTAG Protein sequence : MLDVHPSVFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRS PRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWW RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEM FYNSKRRHGSSEQMSPTEYENQYYQRLGSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpB | CAB61574.1 | transposase B | Not tested | HPI | Protein | 2e-43 | 45 |
| trp1329B | CAB46576.1 | IS1329 transposase B | Not tested | HPI | Protein | 1e-42 | 45 |
| unnamed | AAL57581.1 | transposase 1 | Not tested | LEE | Protein | 5e-40 | 45 |
| unnamed | AAL57519.1 | transposase 1 | Not tested | LEE | Protein | 2e-40 | 45 |
| ECO111_3732 | YP_003236068.1 | putative IS3 transposase InsF | Not tested | LEE | Protein | 4e-41 | 45 |
| unnamed | AAC31485.1 | L0006 | Not tested | LEE | Protein | 7e-28 | 42 |
| ECs4537 | NP_312564.1 | hypothetical protein | Not tested | LEE | Protein | 1e-27 | 42 |
| unnamed | CAI43898.1 | putative transposase | Not tested | LEE | Protein | 8e-29 | 42 |
| aec65 | AAW51748.1 | Aec65 | Not tested | AGI-3 | Protein | 8e-29 | 42 |
| l7094 | CAD33743.1 | ORF B protein | Not tested | PAI I 536 | Protein | 5e-29 | 42 |
| orfB | CAE85178.1 | OrfB protein, IS911 | Not tested | PAI V 536 | Protein | 5e-29 | 42 |
| Z5089 | NP_290241.1 | transposase | Not tested | LEE | Protein | 1e-27 | 42 |
| unnamed | ACU09432.1 | IS911 transposase orfB | Not tested | LEE | Protein | 8e-28 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SFV_2004 | YP_689449.1 | ISEhe3 orfB | VFG1484 | Protein | 3e-29 | 42 |
| SFV_2004 | YP_689449.1 | ISEhe3 orfB | VFG0785 | Protein | 4e-28 | 42 |
