Gene Information

Name : SFV_1897 (SFV_1897)
Accession : YP_689353.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : IS629 ORF2
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1940354 - 1941046 bp
Length : 693 bp
Strand : -
Note : Code: L; COG: COG2801

DNA sequence :
ATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTATGCAGCGAACTGCATATTGCCCCGTCAACGTA
TTACCACTGTCAGCAACAGCGACATCATCCGGATAAACGCAGTGCCCGTGCGCAGCGCGATGACTGGCTGAAGAAAGAGA
TACAGCGCGTATACGATGAAAATCACAAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGA
GTGGCCAGATGCACTGTGGCACGTCTCATGGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGAC
CATCAGCCGGAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGG
CTGATTTTACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTG
GGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTC
CGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTAC
TGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGTTGTGA

Protein sequence :
MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIR
VARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIV
GWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-101 99
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-104 99
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-105 99
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-105 99
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-78 99
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-104 98
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-104 98
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-100 97
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 8e-102 97
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 8e-102 97
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 8e-102 97
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 1e-101 97
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-101 96
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-101 96
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-102 96
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-102 96
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 2e-103 96
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 1e-103 96
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 4e-100 94
CDCE8392_1774 YP_005134308.1 transposase-like protein Not tested Not named Protein 2e-33 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-36 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_1897 YP_689353.1 IS629 ORF2 VFG1602 Protein 2e-100 94