Gene Information

Name : SFV_1263 (SFV_1263)
Accession : YP_688773.1
Strain : Shigella flexneri 8401
Genome accession: NC_008258
Putative virulence/resistance : Unknown
Product : IS600 ORF1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 1319604 - 1319906 bp
Length : 303 bp
Strand : +
Note : Code: L; COG: COG2963

DNA sequence : 
ATGAGCAGAAAAACCCAACGTTACTCTAAAGAGTTCAAAGCCGAAGCTGTCAGAACGGTTCTTGAAAATCAACTTTCGAT
CAGTGAAGGCGCTTCCCGATTATCTCTTCCTGAAGGCACTTTAGGACAATGGGTTACCGCCGCCAGAAAAGGGCTCGGTA
CTCCTGGTTCCCGCACGCTGGCTGAACTGGAATCTGAAATTCTGCAACTGCGTAAGGCGTTAAATGAAGCTCGCCTTGAG
CGAGATATATTAAAAAAAGCAACAGCGTATTTTGCACAGGAGTCACTGAAAAATACGCGTTAA

Protein sequence : 
MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLE
RDILKKATAYFAQESLKNTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09021.1 unknown Not tested SHI-O Protein 9e-40 100
unnamed AAF09029.1 unknown Not tested SHI-O Protein 9e-40 100
tnpJ AAD44752.1 TnpJ Not tested SHI-2 Protein 2e-39 99
unnamed AAQ07469.1 TnpJ-like protein Not tested Not named Protein 2e-39 99
c3576 NP_755451.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-39 98
hp2 AAC61714.1 Hp2 Not tested PAI I CFT073 Protein 3e-39 98
Z1150 NP_286685.1 hypothetical protein Not tested TAI Protein 2e-33 97
Z1589 NP_287093.1 hypothetical protein Not tested TAI Protein 2e-33 97
EXB21 ABD94708.1 putative transposase Not tested ExoU island B Protein 4e-09 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFV_1263 YP_688773.1 IS600 ORF1 VFG1707 Protein 1e-39 98