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Name : hsdR (CHU_3349) Accession : YP_679928.1 Strain : Cytophaga hutchinsonii ATCC 33406 Genome accession: NC_008255 Putative virulence/resistance : Unknown Product : type I restriction-modification system R subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 3826169 - 3829060 bp Length : 2892 bp Strand : - Note : - DNA sequence : TTGAGCATAATTTTTATACTAAAGATGTCTAAACAATCGGAACAAATATTAGAGGAACAATTACTTATTCAATTGCACAA ACTGGGCTATGAAAAAGTAATTTTGCCAAATGAAGACGCATTGCTGCTTAATCTGAAAAAGCAGCTTGAAAAGCACAATA AAATTACTTTTTCAAAAGCCGAGTTTGATAAGGTCTTAAATATTGTAAATAAGGGCTCTGTTTTTGAAAAAGCTAAAATA CTTCGACAAAGACAACATATTATAAGAGATAATGGCGATAATCTGTATTTTGAATTTCTTAATACAGACTATTGGTGTCA GAATGAATACCAAGTAACAAATCAATTATCGCAGGAAGGCAGATATCTGAACCGGTATGATGTTACCTTATTAATTAATG GCTTGCCGTTGGTTCAGATAGAACTTAAGAGAAGAGGCCTGGAATTAAAAGAAGCATTTAACCAGATAGATCGCTACAGA AAACATAGCTTTGGTTCAGGCCATGGTCTATATCATTTTGTACAGTTATTTGTGATCAGCAATGGTGTTAATACAAAATA CTTCGGAAATTTTGGAATACACAAGCAGGAATATTTGCAGACGTTTCACTGGACAGACGAAAACAATAAACCGCTTAATA ATATTCTAAATGGTTTTACAGATACATTTTTAGAACCCTGTCATATCAGTAAAATGATATGTAAGTACATCGTTCTTCAT GAGACAGAGAAGAAGCTCATGGTTTTGCGTCCTTACCAATATTTCGCAGTAGAAAATATTATTAAAAAGGTAAAGGAAAA TGAAGTACTCAATGGTTATGATATAAACAAAAACGGTTACATCTGGCATACTACAGGTAGCGGTAAAACCCTTACCAGTT TTAAAGCAAGTCAGATACTTTCAAATATTCCTGCCATCAAAAAAGTGGTGTTTGTGGTGGATAGGAAAGATCTGGATTAT CAGACGAATCAGGAATATGAAAAGTTTAGTCAAGGGTGTGTAAGCAGTGTTGGTAATACAGATGATCTTATTAAAAAGTT TAATGATCCTGCGGAACGTATTATTGTTACTACGATTCAGAAATTAAATAACGCAATTTCGGGTAAAAATATTTATAAAA TGAAAGCCATGCAAGATCAACGCATGGTTTTCATTTTTGATGAATGCCATAGAAGTCAGTTTGGAGATACTCATAAAAAT ATCGTAAGTTATTTTACCAATATTCAGTTATTTGGTTTTACTGGTACTCCAATATTGGTAGAGAATGCCAACGGTGAAAA AACTACAGCAAGCTTGTTTGGTAAATGTTTGCATAAATATGTGATTACGGATGCAATACGTGATGAAAATGTTTTGCGTT TTTCGGTAGAGTATATTCAAACCTTTAAACAAAAAGAGCACATCGTTGATTTAAAGATAGAACAGATCAATGAAACAGAA GTATTTGAAGCTCCTGAACGCAAAGAAGCAATTGTAAATTACATTTTGCAACATCATAAACAAAAAACGCAGCAGGGCAA ATATTGTGCAATGATGTGTGTACAGGATATTGATTCAGTGATCCAGTACTATGAAATACTAAAAGCAATGAAAAAGGCAG GAGAACATCAACTGAAGATTATAACCATTTTTAGCTTTGCTCAAAACGAAGATCCATTGGATTATGAAATTAAAACGGAA TTAAGTGTGGTTGAAGAGCCAAAAGCATTATATGGCCTTCCACCACACAGACGGGAATTATTAGATGCTTATATAGGAGA TTTTAATCAGCTATATGATACGGCTCATAGTACAAAAGACTCTCAAAGTTTTTACACGTATTATAACGACGTAGCTAAGA AGGCAAAAAATAATGAGATGGATATTTTATTAGTGGCCAATATGTTTCTTACCGGTTTTGATAGCAAATATCTCAATACA CTTTATGTTGACAAAAATCTTCAATATCATGGATTGATACAAGCATTTAGCCGAACAAACCGAACGCATGATAAAAATAA GACCCAGGGAAATATTGTTTGCTTTCGGAATCTGAAAGATAAAACAGACGAAGCGATAACGTTGTTCAGCAATCGGGAAG CAATTGATGAAGTAATCGTAGCGCCTTATGAAACCTATGTGGAAGAGTTTAATAAAGCCGTAAATCAATTAAAAGCAATA GTTCCCAATGTAGATTCAGTCGATGATTTATATACAGAAGAAGACCAGCTGAAGTTTATTCTGGCTTTCAGAAATATGAT TCGGCTACATAAGAAAATGAGTCATTATACAGAATTTACCTGGGATGATCTTGAAATTGAGGAGCAGAGTTTTTTAGATT ACAGTAGCAAATATCAGGATTTAAAGGACAGTATTGTTCATAAATCTGATAAAGAAAAAACATCTATTCTGGATGATATT GATTTTGAATTAGAGCTGATCAAAAAAGACACGATCAATGTTTCTTACATCGTACAACTCTTATTTAAACTTAAAGTGAA GAAAGGTAAAAAAGATAAAGAAGAAGTTGAAAAAGAAATTTTCAATCTGCTTAATACTGAAGTTTCACTTCGCAGTAAGA GAGAATTAATTGAAAAATTCATCAAAGAAAATATGTCCAAGATTGTTGAAGCCGAAGATATCGTGGATGAGTTTACGAGG TTCTGGAACGAAGAGCAGCAAAAAGCGTTTGATGAGTTAGTGCAGGATGAGAATCTTTCTGCTGAACGTACACAGCACCT TATCGAAGGTTACTTATTTTCTGAACAGGAACCTTTGAGGGATGAAATCTTAAAATTGCGAAATGAAGGAAGGCCTAGTG CTTTGCAGGCAAAAGACATTAGCAATAGAATTTTACAACGGATTAAAGATTTCGTAAATACATTTATAAATGGAATGAAT ATAGCAGCGTAA Protein sequence : MSIIFILKMSKQSEQILEEQLLIQLHKLGYEKVILPNEDALLLNLKKQLEKHNKITFSKAEFDKVLNIVNKGSVFEKAKI LRQRQHIIRDNGDNLYFEFLNTDYWCQNEYQVTNQLSQEGRYLNRYDVTLLINGLPLVQIELKRRGLELKEAFNQIDRYR KHSFGSGHGLYHFVQLFVISNGVNTKYFGNFGIHKQEYLQTFHWTDENNKPLNNILNGFTDTFLEPCHISKMICKYIVLH ETEKKLMVLRPYQYFAVENIIKKVKENEVLNGYDINKNGYIWHTTGSGKTLTSFKASQILSNIPAIKKVVFVVDRKDLDY QTNQEYEKFSQGCVSSVGNTDDLIKKFNDPAERIIVTTIQKLNNAISGKNIYKMKAMQDQRMVFIFDECHRSQFGDTHKN IVSYFTNIQLFGFTGTPILVENANGEKTTASLFGKCLHKYVITDAIRDENVLRFSVEYIQTFKQKEHIVDLKIEQINETE VFEAPERKEAIVNYILQHHKQKTQQGKYCAMMCVQDIDSVIQYYEILKAMKKAGEHQLKIITIFSFAQNEDPLDYEIKTE LSVVEEPKALYGLPPHRRELLDAYIGDFNQLYDTAHSTKDSQSFYTYYNDVAKKAKNNEMDILLVANMFLTGFDSKYLNT LYVDKNLQYHGLIQAFSRTNRTHDKNKTQGNIVCFRNLKDKTDEAITLFSNREAIDEVIVAPYETYVEEFNKAVNQLKAI VPNVDSVDDLYTEEDQLKFILAFRNMIRLHKKMSHYTEFTWDDLEIEEQSFLDYSSKYQDLKDSIVHKSDKEKTSILDDI DFELELIKKDTINVSYIVQLLFKLKVKKGKKDKEEVEKEIFNLLNTEVSLRSKRELIEKFIKENMSKIVEAEDIVDEFTR FWNEEQQKAFDELVQDENLSAERTQHLIEGYLFSEQEPLRDEILKLRNEGRPSALQAKDISNRILQRIKDFVNTFINGMN IAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 3e-171 | 42 |
