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Name : clpA (CHU_1079) Accession : YP_677696.1 Strain : Cytophaga hutchinsonii ATCC 33406 Genome accession: NC_008255 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : 3.4.21.92 Position : 1254397 - 1256943 bp Length : 2547 bp Strand : + Note : - DNA sequence : ATGGAAGCAAAATTTTCAAATCGGGTAAAAGAGGTGATTTCCTTAAGCCGGGAAGAAGCATTGCGCTTGGGTCATGATTA CATTGGTGCCGAACACCTGTTGTTAGGAATGATTCGCGAAGGAGAAGGTGTGGCAATTAGTTTATTAAAAAAACTAGGCA TCACGTTAGATTCTTTAAAAAAGTCGCTAGAAGAAGCCGTTCGTGGAACAGCTACTGGTAACGTTAAAAACCTTACCAAT ATTCCTCTGACAAGACAGGCAGAAAAAGTATTAAAGATTACATATCTGGAAGCAAAGATCTTCAAAAGTGATCTTATTGG TACAGAACATTTATTGTTATCTGTATTGAGAGATGAAGATAATGTTGCTACACAAATATTAAACAAATTTGATATTACGT ATGATGTTATCAAGGAATTGCTTGAATACCATACGCACACACCAAAAGCTACAGATGCTGAAGATGCAGATGACGATTCA TCTCGTTTGTTCGGTAACAGCGGTTCTGGTGCGGGTAAAGAAGCAGCTCGTCCGGGTGCTGAAAAATCAAGAACACCTGT ACTTGATAACTTCGGCAGAGATTTAACAAAATACGCGGAAGATGGAAAACTTGATCCGATCATTGGTCGTGAAAAAGAAA TCGAACGTGTTGCGCAAATCTTGTCCCGTCGCAAAAAGAATAACCCGATCCTGATCGGTGAACCGGGTGTGGGTAAAACA GCTATCGCTGAAGGTCTTGCATTACGTATTGTTCAGAAGAAAGTATCACGTGTTTTATTCGGTAAACGTGTAGTAACATT GGATCTGGCTTCATTGGTGGCAGGTACAAAATACCGCGGTCAGTTTGAAGAGCGTATGAAAGCAGTTATGAATGAACTGG AAAAATCTCCTGAGGTTATTCTGTTTATTGATGAGATTCATACCATTGTTGGTGCAGGCGGTGCTTCCGGTTCATTGGAT GCATCGAACATGTTTAAACCGGCATTGGCGAGGGGAGACATACAATGTATTGGTGCTACTACCTTAGATGAGTACCGTCA GTACATCGAAAAAGATGGTGCTTTGGCTCGTCGTTTCCAGATTGTAATGGTAGATGCAACAACACCGGAAGAGACTGTTC AGATTTTGAACAACATCAAAGAGAAATACGAAGATCACCATAATGTAATTTATTCTCCGGAAGCATTGGAAGCTTGCGTT AAGTTATCGGATCGTTATATCAGCGACCGTTTCTTACCGGATAAAGCAATTGATGTGTTGGATGAAGCAGGTGCCCGTGT ACACATTAACAATATTCACGTTCCTGCAGATATCCTGAAACTGGAAGAGCAGATTGAGAATATCAAAAAAGAAAAAAACA AAGTTGTTAAAAGTCAGAAATACGAAGAAGCTGCTCAATTGAGAGACTCTGAGAAAAAACTGATCGAACAGTTGGATAAC GCCAAACTTCGTTGGGAAGAAGAAACCAAGAAGAAACGTTACCATGTAAAAGAAGAGAACGTTGCAGAAGTAATTGCCAT GATGACGGGTATTCCTTCTGCACGTGTTGCGCAGAAAGAATCATTGAAACTGTTAAGCATGGGGTCTGATCTGAAGGCTG CCGTTGTTGGACAGGATCAGGCAATTGAAAAATTAGTAAAAGCCATTCAACGTACACGTGTAGGGTTAAAAGATCCGAAG AAACCGATTGGTTCATTCATCTTCTTAGGTCCGACAGGTGTTGGTAAAACTGAATTAGCGAAGTCTCTTGCTAAATATTT ATTCGATAAAGAAGATTCGCTGGTACGTATTGATATGTCTGAGTATATGGAGAAATTCTCTGTATCGAGATTGGTTGGTG CGCCTCCGGGATATGTCGGATACGAAGAAGGTGGTCAGTTGACTGAGAAAATCCGTCGTAAGCCATACAGTGTTGTATTG CTTGATGAGATTGAGAAAGCGCACCCGGATGTATTTAACTTAATGCTTCAGGTATTGGATGACGGTATCTTAACAGATGG TTTAGGGAGAAGAGTAGATTTCAGAAATACAATCATCATCATGACATCAAACATTGGTGTTCGTGACTTGAAAGATTTCG GATCAGGTATCGGTTTCAATACACAATCCCGTAAAGAGAATGTAGATGAAATGATGAAAGGTACGATCCAGAATGCCTTA CGTAAAGCATTCTCTCCTGAATTCTTAAACCGTTTGGATGATGTAATTGTATTCAACTCTTTAACAAGAGAAGATATTCA TGTAATCATCGATATCACGTTGGCAAAAGTATTCTCAAGAATCACAACATTGGGTTATACAATTGAATTAACGGATAAAG CGAAGGATTTCTTAGCGGAAAGAGGTTATGACCAGCAATATGGTGCGCGTCCGTTGAACCGAGCGATACAGAAATATCTT GAAGATCCGATTGCAGAAGAAATTCTGAAAGGAGATGTTCAGGAAGGTGATACAATCTTAGCTGACTACAAAGAAGGTGC AGATGGTTTAACTGTTCGCAATAAAAAACAAGCCGAAGAAACAACGGAAGGCGAAAAAGAAAAATAA Protein sequence : MEAKFSNRVKEVISLSREEALRLGHDYIGAEHLLLGMIREGEGVAISLLKKLGITLDSLKKSLEEAVRGTATGNVKNLTN IPLTRQAEKVLKITYLEAKIFKSDLIGTEHLLLSVLRDEDNVATQILNKFDITYDVIKELLEYHTHTPKATDAEDADDDS SRLFGNSGSGAGKEAARPGAEKSRTPVLDNFGRDLTKYAEDGKLDPIIGREKEIERVAQILSRRKKNNPILIGEPGVGKT AIAEGLALRIVQKKVSRVLFGKRVVTLDLASLVAGTKYRGQFEERMKAVMNELEKSPEVILFIDEIHTIVGAGGASGSLD ASNMFKPALARGDIQCIGATTLDEYRQYIEKDGALARRFQIVMVDATTPEETVQILNNIKEKYEDHHNVIYSPEALEACV KLSDRYISDRFLPDKAIDVLDEAGARVHINNIHVPADILKLEEQIENIKKEKNKVVKSQKYEEAAQLRDSEKKLIEQLDN AKLRWEEETKKKRYHVKEENVAEVIAMMTGIPSARVAQKESLKLLSMGSDLKAAVVGQDQAIEKLVKAIQRTRVGLKDPK KPIGSFIFLGPTGVGKTELAKSLAKYLFDKEDSLVRIDMSEYMEKFSVSRLVGAPPGYVGYEEGGQLTEKIRRKPYSVVL LDEIEKAHPDVFNLMLQVLDDGILTDGLGRRVDFRNTIIIMTSNIGVRDLKDFGSGIGFNTQSRKENVDEMMKGTIQNAL RKAFSPEFLNRLDDVIVFNSLTREDIHVIIDITLAKVFSRITTLGYTIELTDKAKDFLAERGYDQQYGARPLNRAIQKYL EDPIAEEILKGDVQEGDTILADYKEGADGLTVRNKKQAEETTEGEKEK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpA | YP_677696.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0079 | Protein | 0.0 | 52 |
| clpA | YP_677696.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0080 | Protein | 8e-144 | 51 |
