|
Name : Meso_0779 (Meso_0779) Accession : YP_673344.1 Strain : Chelativorans sp. BNC1 Genome accession: NC_008254 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 855169 - 857103 bp Length : 1935 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD Male sterility-like; KEGG: bms:BR0510 epimerase/dehydratase, putative DNA sequence : ATGCGATTGAGAAGCCTCGTCGAGTGGCTGCACATGCGCTCGCGCCGGACCAAAAGAGCCATGCTGCTGTCTGCAGACGT GGTTGGCCTGATGGCCATCATCTGGCTTGCCTTCTGCTTCCGTTTCAACCAGTTCTTCATTCCCAATCTCGAGCAGACGC TTTTGATCCTGGCTGCGCCGGTCATTGCCATCCCCATCTTCATCCGGATGGGCCTTTACCGGGCGGTTCTGCGGTACCTG CAGGAACAGGCGATATGGACAATGATCCGGGCGGTGACCTTCTCCAGCCTGGCATGGGTTGGGCTCGCCTTCATTACCTT ATCCTACGGCGCGGACGGCGTTCCGCGCACGATCGCTGTCCTCTATTGGGCTGGAAGTCTTGTCAGCGTGGTCGGCAGCC GCCTCGGCATCAAATGGCTGCTCAACGGGCGCATCTCTCATGCCGCGCATAAAAAGCGGGTCCTCGTTTATGGCGCTGGG GATGCGGCGATGCAGCTGGCGGAAGCGCTCAGCGCCTCCGGTGACCGTCAGGTCGTCGGCATCGTCAGCGATGATTCCGG CCTGCATGGGATGGAGATCGTCGGCATCCGGGTCTATCCCGCCGAACAGCTCGAAGACCTGGTTCTCGACACGGAGGCGC AGGAGGTCATCATCGCGGCCTCATCGTCGAGCACGCGCCGACGCCGCGAGCTTGTGACGCGGCTGGGCCGGTTCCCGGTG AAAATCCGCGTCCTTCCCTCCATCGCCGACGTGGCCGCGGGGAAATATCTCGTAAGTTATGTCCGCGACATCGATATCGA CGACCTTCTGGGCCGCTCACCGGTGCCCGCCGATCCCGAATTGATGCGGTCGAGCATCGATGAGCGCATCATAATGGTGA CTGGTGCTGCGGGATCGATCGGCTCAGAGGTGTGCCGCACAATCGCACGCGGGAAGCCGACGAAACTCGTGCTTTTCGAG ATGAACGAGCCCGGCCTTTATCAGATCGAGCGGGAGCTGCGGCGATACGGCGCTTTTCCGATCGTGCCCGTGCTCGGTTC GGTCTGCGATGCGCACCTCGTCCGGCAGACGCTGGCCGAACACGGAGTACAGACCGTCTACCACTGCGCTGCCTACAAGC ACGTGCCTCTCGTCGAATGCAATCCACTCGAGGGCGTGCGCAACAACGTATTCGGCACCTTGACCCTTGTGGAAGAAGCC TGCGCGGCCGATGTGCGAAACTTCATTCTCATCTCCTCGGACAAGGCGGTGCGGCCCACAAGCGTAATGGGCGCCACCAA GCGCCGGGCGGAGCTGATCGTGCGCTATGTCGGCGAGGAGGCCTGCAAGAAGGAGAAGAACCGCGTCTTCTCTTCCGTGC GTTTCGGAAATGTCATCGGGTCCAGTGGCTCCGTCGTACCGCTCTTCAAAGAGCAGATCGCAGCGGGAGGACCAGTCACG CTCACGCATGACGACATGACACGTTATTTCATGTCGGTGCGCGAGGCTGCGGGGCTGATCGTGCAGGCGGGCGCGCTTTC GCGCAGCGGCGATATTCTCCTCCTCGATATGGGAGAGCCGATCAGGATCCGCCAGCTTGCCGAGGATATGATCATGCTCG CCGGCTTCACCGTTCGAAACGAAGACAATCCCGATGGAGACATCGAGATCGTCACGATCGGGATGCGTGACGGGGAGAAG CTTTACGAGGAGCTTTTCTACGATCCCGCCGGCGTGACCACGACCCGCCACCCCAAGATCCTGCGGGCCGGCCAGCTTGG AACAACCGAACAGATACCGGCAATGATCGCACAGCTTAAACTCGCCGTCGAACATGGCGATGTGACCGCGGTGCGTCAGG TTCTCTTTGGGCTTATCGGCGAAAATGGCCGGCTGGCGCCTGTTCCGAAACTGCCGCCCGTGCCTACGGATGAAAACTTA CGGCGCAGGGCGTGA Protein sequence : MRLRSLVEWLHMRSRRTKRAMLLSADVVGLMAIIWLAFCFRFNQFFIPNLEQTLLILAAPVIAIPIFIRMGLYRAVLRYL QEQAIWTMIRAVTFSSLAWVGLAFITLSYGADGVPRTIAVLYWAGSLVSVVGSRLGIKWLLNGRISHAAHKKRVLVYGAG DAAMQLAEALSASGDRQVVGIVSDDSGLHGMEIVGIRVYPAEQLEDLVLDTEAQEVIIAASSSSTRRRRELVTRLGRFPV KIRVLPSIADVAAGKYLVSYVRDIDIDDLLGRSPVPADPELMRSSIDERIIMVTGAAGSIGSEVCRTIARGKPTKLVLFE MNEPGLYQIERELRRYGAFPIVPVLGSVCDAHLVRQTLAEHGVQTVYHCAAYKHVPLVECNPLEGVRNNVFGTLTLVEEA CAADVRNFILISSDKAVRPTSVMGATKRRAELIVRYVGEEACKKEKNRVFSSVRFGNVIGSSGSVVPLFKEQIAAGGPVT LTHDDMTRYFMSVREAAGLIVQAGALSRSGDILLLDMGEPIRIRQLAEDMIMLAGFTVRNEDNPDGDIEIVTIGMRDGEK LYEELFYDPAGVTTTRHPKILRAGQLGTTEQIPAMIAQLKLAVEHGDVTAVRQVLFGLIGENGRLAPVPKLPPVPTDENL RRRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-70 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Meso_0779 | YP_673344.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-101 | 45 |
