Gene Information

Name : Meso_2852 (Meso_2852)
Accession : YP_675393.1
Strain : Chelativorans sp. BNC1
Genome accession: NC_008254
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3102015 - 3102830 bp
Length : 816 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein

DNA sequence : 
ATGAACCGCGTGGCTTTCAAAGTCGAGAGAGATCAAGGCGCAACCGCCGCGTTCGTCGCGCCTGGCGAAAGCCCGCTTTC
CATAAACGAGCTCACCGTTTCCTATGGCGAAAAGCCCGCGGTCTTCGCGGTGGACGCGACGGTCCCGCCGCAATCCATGA
CAGCCATTGTCGGGCCCAACGGGGCTGGCAAATCCACGCTGCTTAAGGCTGCCCTCGGGATTGTGCCACGCCTTTCAGGG
CAGGTTCGCGTTTATGGCAAACCGCTGGCGCAGGTCATGAATCGCATTGCCTATGTGCCGCAGAGGGCTTCGGTCGACTG
GGATTTCCCGACGCGTGTGATCGATGTCGTCCTGATGGGGCTCTATCGTGAGCTCGGCCTTCTTCGCTTTTTGCGCAGCC
CGCATAAGGAAAAGGCGCTTGCGTGCCTAAACCGCGTCGGCATGGCCGATTTCGCTTATCGCCAGATCGGACAGCTTTCG
GGAGGGCAGCAGCAGCGGGTGTTTCTCGCCCGCGCTCTGGCGCAAAGTGCCGATCTTTATCTTCTGGATGAACCCTTTGC
AGGCGTGGATGCGGCGACGGAGAAGGCAATCATCGACGTGCTGAAGGCGCTGAAGGCAGAGCACAAGACCCTGGTTTGCG
TCCATCATGACCTCTCGACGGTGACCCAGTATTTTGACCGAGTTCTTCTCATCAACACGCGCAAGATCGCCGAAGGACCC
GTCGCTACCACATTCACGGAGGAAAACCTGCAAAAAACCTATGGTGGACGGCTCGCCACGGCTCATATCGAGCAGTTGAA
GCTGCCTGCGGCGTAA

Protein sequence : 
MNRVAFKVERDQGATAAFVAPGESPLSINELTVSYGEKPAVFAVDATVPPQSMTAIVGPNGAGKSTLLKAALGIVPRLSG
QVRVYGKPLAQVMNRIAYVPQRASVDWDFPTRVIDVVLMGLYRELGLLRFLRSPHKEKALACLNRVGMADFAYRQIGQLS
GGQQQRVFLARALAQSADLYLLDEPFAGVDAATEKAIIDVLKALKAEHKTLVCVHHDLSTVTQYFDRVLLINTRKIAEGP
VATTFTEENLQKTYGGRLATAHIEQLKLPAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-46 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-46 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-43 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-44 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-44 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-43 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-43 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_2852 YP_675393.1 ABC transporter BAC0400 Protein 1e-67 57
Meso_2852 YP_675393.1 ABC transporter BAC0440 Protein 3e-47 44
Meso_2852 YP_675393.1 ABC transporter BAC0350 Protein 4e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_2852 YP_675393.1 ABC transporter VFG0526 Protein 3e-44 43