Gene Information

Name : Meso_2758 (Meso_2758)
Accession : YP_675300.1
Strain : Chelativorans sp. BNC1
Genome accession: NC_008254
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 3006100 - 3006789 bp
Length : 690 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20832 putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein

DNA sequence :
ATGATCGATCTCATCAATATCTCCAAATCCTATACGGCAAAGGGCGTTAAGAAGCGGGTGATCGATCGCTTGAGCTTCAG
TTTCCCGCGCGACAAGAATGTCGCCATCCTCGGCCCAAATGGCGCTGGCAAGTCGACACTGATGCGGCTTATAGCCGGTA
CCGAGTTACCCGACGAAGGCCGCATTGTCCGGCATGGCCGTGTTTCCTGGCCACTTGGCTTTGCCGGCGGCTTCAATGGT
TCGATGACCGGCATCGAGAACATCCGCTTTGTTGCGCGGATCTATGGCCAGAAGACCAACGCGGTCATCGACTATGTCCA
TGACTTCGCCGAGCTCGGCAAATCGCTGAGTTTACCGGTGAGGACGTATTCAAACGGGATGAAGGCCCGCCTCGCCTTCG
GCCTCAGCATGGCTATTGATTTTGACTGCTACCTTATAGACGAGATAACGGCGGTGGGAGACGAGAACTTCCGGCGGAAG
TCGAGAAAAGTCTTCACGGAAAAACTTCCTCACGCCCGCATCTTCATGATCTCGCATGCCATGAACCAGATCCTGGAATA
CTGCCAGTGCGGCCTTCTGATTTCTCCGGAGGGTGTTTGGTATTTCGATGACGTGAGGGATCTCATCAGGGCCTACGAAA
CATCCAATAAGGCGCGTCTTGCGGCGCAGCCGGCCCCCCTTTCGAGCTAG

Protein sequence :
MIDLINISKSYTAKGVKKRVIDRLSFSFPRDKNVAILGPNGAGKSTLMRLIAGTELPDEGRIVRHGRVSWPLGFAGGFNG
SMTGIENIRFVARIYGQKTNAVIDYVHDFAELGKSLSLPVRTYSNGMKARLAFGLSMAIDFDCYLIDEITAVGDENFRRK
SRKVFTEKLPHARIFMISHAMNQILEYCQCGLLISPEGVWYFDDVRDLIRAYETSNKARLAAQPAPLSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-47 45
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 1e-42 44
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 1e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_2758 YP_675300.1 ABC transporter VFG1449 Protein 9e-48 45
Meso_2758 YP_675300.1 ABC transporter VFG0258 Protein 4e-43 44
Meso_2758 YP_675300.1 ABC transporter VFG2563 Protein 6e-44 43
Meso_2758 YP_675300.1 ABC transporter VFG0696 Protein 7e-44 41