Gene Information

Name : Meso_0111 (Meso_0111)
Accession : YP_672681.1
Strain : Chelativorans sp. BNC1
Genome accession: NC_008254
Putative virulence/resistance : Virulence
Product : export protein FliQ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 139277 - 139516 bp
Length : 240 bp
Strand : +
Note : PFAM: export protein FliQ, family 3; KEGG: dvu:DVUA0103 type III secretion protein, HrpO family

DNA sequence :
ATGGCGCGCAACGCCATTGTCCTGGTCTTTTATCTGTCCATGCCGCTGATCATCGCCGCCACGGTGGTTGGACTGATGGT
GGCGATTGTCCAGACGCTGATCCAGCTCCAGGAGCAAACGGTTGCCTTCGCGGCGAAACTGACTGCCGTGGTGCTGATCC
TGTCCTTTTCCATCGGAGGAATGTCATCCCATTTGCTGAGTCTTTTCGAGCAGGTGATGAACGAGATCTTGAGGATCTGA

Protein sequence :
MARNAIVLVFYLSMPLIIAATVVGLMVAIVQTLIQLQEQTVAFAAKLTAVVLILSFSIGGMSSHLLSLFEQVMNEILRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaQ YP_217808.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 5e-04 44
spaQ NP_457283.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-04 44
spaQ NP_806492.1 virulence-associated secretory protein Virulence SPI-1 Protein 5e-04 44
spaQ NP_461810.1 needle complex export protein Virulence SPI-1 Protein 5e-04 44
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 5e-06 41
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.041 41
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 0.029 41
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.042 41
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.042 41
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.041 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_0111 YP_672681.1 export protein FliQ VFG0550 Protein 1e-04 44
Meso_0111 YP_672681.1 export protein FliQ VFG0395 Protein 1e-06 43
Meso_0111 YP_672681.1 export protein FliQ VFG0520 Protein 0.012 41