Gene Information

Name : Meso_0110 (Meso_0110)
Accession : YP_672680.1
Strain : Chelativorans sp. BNC1
Genome accession: NC_008254
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 138551 - 139213 bp
Length : 663 bp
Strand : +
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACGGCGGTTGAGAACTTCCCGGCTATTCTGCCGACCATCATCGCTGTAATGGCGCTGAGCTTCATTCCGTTTATCGT
GGTAATGGGCACGGCGTTCACAAAGATATCCATCGTGTTGATGCTGTTGCGCAATGCAATCGGCGTGCAACAGGCCCCTT
CGGGGCTGGTGATCAACTCCATCGCCTTGACGCTGACGGTGTTCGTGATGGTCCCGGTCGGGAATGCCATCATCACCCAG
GTGCAGCAGCAGCAATTGGGCTTTACTGGCTGGGAAAATGTCTCCCAGCTGTATTCTGTCGTTTCTGAGGCGTTTACCGG
TTACCTAAAGCAGTTTTCCTCTCCGCGTGAACTCCAGTTTTTCATGGATGCGGCCAGGAAGATGTGGCCTGAAACACTGC
ATGGGCAAATTACAACCGACAACGTTTTCATCCTTTTACCCGCACATGTGACATCGGAACTTACAAGGGCTTTTCAGATC
GCCTTTCTCATTTTCCTGCCCTTTGTTGTGGTCGATATGGTGGTTTCCAATATCTTGCTGGCCATGGGGGCGATGATGGT
GCCGCCCATGCTGGTGTCTCTGCCCATCAAGATACTGTTGTTTGTCGCCGCCGACGGCTGGGCTCTTCTGCTCCACAATC
TCGTATTGAGCTACGCGCGATGA

Protein sequence : 
MTAVENFPAILPTIIAVMALSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIITQ
VQQQQLGFTGWENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDAARKMWPETLHGQITTDNVFILLPAHVTSELTRAFQI
AFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLPIKILLFVAADGWALLLHNLVLSYAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-43 46
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-38 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-38 45
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-39 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-39 44
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-39 44
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-39 44
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-39 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-38 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-38 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 7e-35 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-33 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-33 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-33 42
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 4e-39 42
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 4e-39 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-33 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-33 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-33 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-33 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-28 41
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 3e-28 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-35 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-35 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-35 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-35 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-33 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-34 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Meso_0110 YP_672680.1 type III secretion system protein VFG0394 Protein 2e-44 48
Meso_0110 YP_672680.1 type III secretion system protein VFG0044 Protein 2e-38 47
Meso_0110 YP_672680.1 type III secretion system protein VFG0188 Protein 8e-45 46
Meso_0110 YP_672680.1 type III secretion system protein VFG1773 Protein 2e-40 42
Meso_0110 YP_672680.1 type III secretion system protein VFG0519 Protein 1e-35 41
Meso_0110 YP_672680.1 type III secretion system protein VFG2338 Protein 1e-25 41